Variant report
| Variant | rs2572998 |
|---|---|
| Chromosome Location | chr6:70177309-70177310 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11752704 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1328720 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1328721 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1328730 | 0.81[AMR][1000 genomes] |
| rs1410694 | 0.81[AMR][1000 genomes] |
| rs1743772 | 0.91[EUR][1000 genomes] |
| rs1967451 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2067088 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2094596 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs2183069 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2225219 | 0.80[EUR][1000 genomes] |
| rs2437277 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2573016 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2573027 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2770313 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2770314 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs585831 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs598251 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6913031 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs913542 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs928029 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432919 | chr6:69873179-70221322 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv5340 | chr6:70156159-70200802 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 3 | esv3415649 | chr6:70176280-70201911 | ZNF genes & repeats Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:70177000-70177400 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
