Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11752704	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1328720	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1328730	0.81[AMR][1000 genomes]
rs1410694	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1743772	0.87[EUR][1000 genomes]
rs1967451	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2067088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094596	0.94[AMR][1000 genomes]
rs2183069	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2225219	0.84[EUR][1000 genomes]
rs2437277	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2572998	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2573016	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2573027	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2770313	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2770314	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs585831	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs598251	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6913031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs913542	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs928029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70133000-70137800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:70136000-70138000	Weak transcription	Fetal Brain Male	brain
3	chr6:70136600-70138400	Enhancers	Fetal Brain Female	brain

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