Variant report

Variant	rs2225835
Chromosome Location	chr1:91017183-91017184
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12563762	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12563942	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12566312	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12568782	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17131070	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17131079	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131080	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1819590	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56813953	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72646169	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72646170	0.88[ASN][1000 genomes]
rs72646171	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72646172	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72646173	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72646175	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72646176	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72646177	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72646180	0.92[ASN][1000 genomes]
rs948833	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91016400-91017200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr1:91016400-91017400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:91016400-91017400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:91016400-91017400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:91016400-91017600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:91016600-91017400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:91017000-91017800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:91017000-91020200	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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