Variant report

Variant	rs948833
Chromosome Location	chr1:91057356-91057357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12563762	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12563942	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12566312	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12568782	0.83[ASN][1000 genomes]
rs17131070	0.82[ASN][1000 genomes]
rs17131079	1.00[ASW][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17131080	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1819590	0.83[ASN][1000 genomes]
rs2225835	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56813953	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72646169	0.83[ASN][1000 genomes]
rs72646170	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72646171	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72646172	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72646173	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72646175	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72646176	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72646177	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72646180	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870816	chr1:91018205-91141196	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3323556	chr1:91052980-91071967	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91057000-91057400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:91057000-91057600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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