Variant report

Variant	rs72646169
Chromosome Location	chr1:90967743-90967744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:90962401..90964594-chr1:90964910..90968916,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12563762	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12563942	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12566312	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12568782	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336881	0.84[ASN][1000 genomes]
rs17131070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17131079	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17131080	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1819590	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225835	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56813953	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs693260	0.84[ASN][1000 genomes]
rs72646170	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72646171	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72646172	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72646173	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72646175	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72646176	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72646177	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72646180	0.83[ASN][1000 genomes]
rs948833	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1801569	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1808806	chr1:90819992-90983299	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1822918	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1850863	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2757740	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2758949	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv427697	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv428124	chr1:90819992-90983299	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv1811797	chr1:90819992-91008105	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90960400-90967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:90960600-90967800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:90966000-90968800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:90966000-90968800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:90966200-90968600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:90966200-90968600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:90966200-90968800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:90966400-90968400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:90966400-90968600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:90966400-90968600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:90966400-90968800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:90966600-90967800	Enhancers	Dnd41	blood
13	chr1:90966600-90968200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr1:90966600-90968400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:90966600-90968800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:90966800-90968600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:90966800-90974800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:90967000-90968600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:90967200-90968000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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