Variant report

Variant	rs223623
Chromosome Location	chr2:32031270-32031271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11682335	1.00[CEU][hapmap]
rs160792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs160793	1.00[CEU][hapmap]
rs160796	1.00[CEU][hapmap]
rs2116030	1.00[CEU][hapmap]
rs221195	1.00[CEU][hapmap]
rs2221789	0.91[EUR][1000 genomes]
rs223619	1.00[CEU][hapmap]
rs223624	1.00[CEU][hapmap]
rs223664	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4952202	1.00[CEU][hapmap]
rs6543641	0.85[AFR][1000 genomes]
rs7589874	1.00[CEU][hapmap]
rs7593078	1.00[CEU][hapmap]
rs806585	0.91[EUR][1000 genomes]
rs806594	0.91[EUR][1000 genomes]
rs809361	0.91[EUR][1000 genomes]
rs974229	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32030800-32031400	Enhancers	Gastric	stomach
2	chr2:32030800-32034800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:32031200-32031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:32031200-32035400	Weak transcription	HepG2	liver
5	chr2:32031200-32037200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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