Variant report

Variant	rs806594
Chromosome Location	chr2:31954168-31954169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1090826	0.82[EUR][1000 genomes]
rs160792	0.91[EUR][1000 genomes]
rs160793	1.00[CEU][hapmap]
rs160796	1.00[CEU][hapmap]
rs221195	1.00[CEU][hapmap]
rs2221789	1.00[EUR][1000 genomes]
rs223619	1.00[CEU][hapmap]
rs223623	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs223624	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs223664	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4952202	1.00[CEU][hapmap]
rs711231	0.82[EUR][1000 genomes]
rs7424544	1.00[CEU][hapmap]
rs7589874	1.00[CEU][hapmap]
rs806585	1.00[EUR][1000 genomes]
rs806593	0.82[EUR][1000 genomes]
rs809361	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974229	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31953000-31954400	Enhancers	Liver	Liver
2	chr2:31953800-31955200	Enhancers	HepG2	liver
3	chr2:31954000-31955000	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links