Variant report
| Variant | rs223664 |
|---|---|
| Chromosome Location | chr2:32019146-32019147 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000223647 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11682335 | 1.00[CEU][hapmap] |
| rs160792 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs160793 | 1.00[CEU][hapmap] |
| rs160796 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs17011667 | 0.81[GIH][hapmap] |
| rs17011668 | 0.81[GIH][hapmap] |
| rs2116030 | 1.00[CEU][hapmap] |
| rs221195 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs2221789 | 0.91[EUR][1000 genomes] |
| rs223619 | 1.00[CEU][hapmap] |
| rs223623 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs223624 | 1.00[CEU][hapmap] |
| rs4952202 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs7589874 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs7593078 | 1.00[CEU][hapmap] |
| rs806585 | 0.91[EUR][1000 genomes] |
| rs806594 | 0.91[EUR][1000 genomes] |
| rs809361 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs974229 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532648 | chr2:31591498-32312698 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | esv3376782 | chr2:31861607-32046180 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003376 | chr2:31889934-32022595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1015021 | chr2:31972738-32030696 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
