Variant report

Variant	rs160793
Chromosome Location	chr2:32035792-32035793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1090829	1.00[EUR][1000 genomes]
rs11682335	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13403364	1.00[AMR][1000 genomes]
rs160794	1.00[EUR][1000 genomes]
rs160796	1.00[CEU][hapmap]
rs160810	0.89[EUR][1000 genomes]
rs2093300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2116030	1.00[CEU][hapmap]
rs221195	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs223618	1.00[EUR][1000 genomes]
rs223619	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs223623	1.00[CEU][hapmap]
rs223624	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs223648	1.00[EUR][1000 genomes]
rs223654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223664	1.00[CEU][hapmap]
rs413895	0.94[EUR][1000 genomes]
rs4141418	1.00[EUR][1000 genomes]
rs486754	1.00[AMR][1000 genomes]
rs490226	1.00[AMR][1000 genomes]
rs4952202	1.00[CEU][hapmap]
rs502824	1.00[AMR][1000 genomes]
rs533970	1.00[AMR][1000 genomes]
rs559693	1.00[AMR][1000 genomes]
rs624859	1.00[AMR][1000 genomes]
rs631826	1.00[AMR][1000 genomes]
rs648652	1.00[AMR][1000 genomes]
rs6543638	1.00[EUR][1000 genomes]
rs6543639	1.00[EUR][1000 genomes]
rs6708897	0.89[EUR][1000 genomes]
rs7589874	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7593078	1.00[CEU][hapmap]
rs7600278	1.00[AMR][1000 genomes]
rs806149	1.00[AMR][1000 genomes]
rs806595	1.00[EUR][1000 genomes]
rs806596	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32031200-32037200	Weak transcription	Pancreas	Pancrea
2	chr2:32032600-32036400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr2:32034800-32035800	Enhancers	HSMMtube	muscle
4	chr2:32034800-32036000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr2:32034800-32038400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr2:32035000-32038200	Weak transcription	Psoas Muscle	Psoas
7	chr2:32035200-32037200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr2:32035400-32036600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:32035400-32037000	Enhancers	HepG2	liver
10	chr2:32035400-32037000	Enhancers	K562	blood
11	chr2:32035600-32035800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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