Variant report
| Variant | rs806595 |
|---|---|
| Chromosome Location | chr2:31954095-31954096 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1090829 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11677520 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1397541 | 1.00[AMR][1000 genomes] |
| rs160793 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs160794 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs160796 | 1.00[CEU][hapmap] |
| rs160810 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2093300 | 1.00[EUR][1000 genomes] |
| rs221195 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs223618 | 1.00[EUR][1000 genomes] |
| rs223619 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs223623 | 1.00[CEU][hapmap] |
| rs223624 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs223648 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs223654 | 1.00[EUR][1000 genomes] |
| rs223663 | 1.00[EUR][1000 genomes] |
| rs223664 | 1.00[CEU][hapmap] |
| rs413895 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4141418 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4952202 | 1.00[CEU][hapmap] |
| rs6543638 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6543639 | 1.00[EUR][1000 genomes] |
| rs6708897 | 0.89[EUR][1000 genomes] |
| rs7424544 | 1.00[CEU][hapmap] |
| rs7589874 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs806596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532648 | chr2:31591498-32312698 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002988 | chr2:31767131-31996924 | Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv3376782 | chr2:31861607-32046180 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv1003376 | chr2:31889934-32022595 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:31953000-31954400 | Enhancers | Liver | Liver |
| 2 | chr2:31953800-31955200 | Enhancers | HepG2 | liver |
| 3 | chr2:31954000-31955000 | Enhancers | Adipose Nuclei | Adipose |
