Variant report

Variant	rs6543639
Chromosome Location	chr2:31961468-31961469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1090829	1.00[EUR][1000 genomes]
rs160793	1.00[EUR][1000 genomes]
rs160794	1.00[EUR][1000 genomes]
rs160810	0.89[EUR][1000 genomes]
rs2093300	1.00[EUR][1000 genomes]
rs221195	0.94[EUR][1000 genomes]
rs223618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223619	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223624	1.00[EUR][1000 genomes]
rs223648	1.00[EUR][1000 genomes]
rs223654	1.00[EUR][1000 genomes]
rs223663	1.00[EUR][1000 genomes]
rs413895	0.94[EUR][1000 genomes]
rs4141418	1.00[EUR][1000 genomes]
rs6543638	1.00[EUR][1000 genomes]
rs6708897	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7589874	0.88[EUR][1000 genomes]
rs806595	1.00[EUR][1000 genomes]
rs806596	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31960400-31961800	Enhancers	HepG2	liver
2	chr2:31961400-31962200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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