Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1090829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11677520	1.00[AMR][1000 genomes]
rs11682335	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1397541	1.00[AMR][1000 genomes]
rs160793	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs160796	1.00[CEU][hapmap]
rs160810	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2093300	1.00[EUR][1000 genomes]
rs2116030	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs221195	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs223618	1.00[EUR][1000 genomes]
rs223619	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs223623	1.00[CEU][hapmap]
rs223624	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223648	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs223654	1.00[EUR][1000 genomes]
rs223663	1.00[EUR][1000 genomes]
rs223664	1.00[CEU][hapmap]
rs413895	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4141418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4952202	1.00[CEU][hapmap]
rs591625	1.00[AMR][1000 genomes]
rs6543638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6543639	1.00[EUR][1000 genomes]
rs6708897	0.89[EUR][1000 genomes]
rs7589874	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7593078	1.00[CEU][hapmap]
rs806595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs806596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32031200-32035400	Weak transcription	HepG2	liver
2	chr2:32031200-32037200	Weak transcription	Pancreas	Pancrea
3	chr2:32032600-32036400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:32034800-32035000	Enhancers	Psoas Muscle	Psoas
5	chr2:32034800-32035200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr2:32034800-32035800	Enhancers	HSMMtube	muscle
7	chr2:32034800-32036000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:32034800-32038400	Enhancers	Skeletal Muscle Male	skeletal muscle

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