Variant report
| Variant | rs2237782 |
|---|---|
| Chromosome Location | chr7:126681865-126681866 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126678600-126685844..7:127233104-127239235 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:126085913-126088095..7:126678600-126685844 | K562 | blood: | |
| 3 | 7:126678600-126685844..7:127009457-127018926 | H1-hESC | embryonic stem cell: | embryo |
| 4 | 7:126678600-126685844..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000106328 | Chromatin interaction |
| ENSG00000179562 | Chromatin interaction |
| ENSG00000048405 | Chromatin interaction |
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10256057 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10954143 | 0.81[EUR][1000 genomes] |
| rs1419434 | 0.82[LWK][hapmap] |
| rs1419444 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1544326 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs1858788 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2299533 | 0.87[GIH][hapmap];0.81[EUR][1000 genomes] |
| rs2402852 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap] |
| rs72020723 | 0.93[EUR][1000 genomes] |
| rs7808643 | 0.81[EUR][1000 genomes] |
| rs929173 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2237782 | ZNF800 | cis | parietal | SCAN |
| rs2237782 | TMEM229A | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126676600-126682000 | Weak transcription | Liver | Liver |
