Variant report

Variant	rs7808643
Chromosome Location	chr7:126736893-126736894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10954143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361955	0.84[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1419444	0.85[EUR][1000 genomes]
rs1858784	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2040502	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs2106183	0.84[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2237782	0.81[EUR][1000 genomes]
rs2237785	0.89[JPT][hapmap]
rs2283094	0.89[JPT][hapmap]
rs2299533	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299540	0.89[JPT][hapmap]
rs2299542	0.94[JPT][hapmap]
rs2402855	0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs6950264	0.89[JPT][hapmap]
rs72020723	0.82[EUR][1000 genomes]
rs929173	0.80[EUR][1000 genomes]
rs978874	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126735200-126742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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