Variant report

Variant	rs2299540
Chromosome Location	chr7:126782312-126782313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10954143	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1361955	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1858784	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040502	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2106183	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2237785	0.82[JPT][hapmap]
rs2283094	0.89[JPT][hapmap]
rs2299533	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2299542	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2402855	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6950264	0.94[JPT][hapmap]
rs7808643	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs978874	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links