Variant report

Variant	rs2240723
Chromosome Location	chr4:10021151-10021152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr4:10020317-10021175	K562	blood:	n/a	n/a
2	POLR2A	chr4:10020474-10021385	MCF10A-Er-Src	breast:	n/a	n/a
3	MAX	chr4:10020317-10021258	HCT-116	colon:	n/a	n/a
4	MTA3	chr4:10020321-10021539	GM12878	blood:	n/a	n/a
5	CTCF	chr4:10020960-10021250	GM12873	blood:	n/a	n/a
6	RAD21	chr4:10020188-10021204	HCT-116	colon:	n/a	chr4:10020565-10020577 chr4:10020340-10020352 chr4:10020976-10020989 chr4:10020505-10020524 chr4:10020563-10020582
7	MAX	chr4:10020338-10021159	H1-hESC	embryonic stem cell:	n/a	n/a
8	NFIC	chr4:10020452-10021209	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr4:10021095-10021497	HepG2	liver:	n/a	n/a
10	MTA3	chr4:10020545-10021283	GM12878	blood:	n/a	n/a
11	POLR2A	chr4:10021061-10021381	HepG2	liver:	n/a	n/a
12	E2F6	chr4:10020395-10021306	K562	blood:	n/a	chr4:10020582-10020593
13	MYC	chr4:10020365-10021203	K562	blood:	n/a	n/a
14	POLR2A	chr4:10020845-10021950	HepG2	liver:	n/a	n/a
15	POLR2A	chr4:10020404-10021393	GM18505	blood:	n/a	n/a
16	POLR2A	chr4:10020462-10021651	GM19193	blood:	n/a	n/a
17	POLR2A	chr4:10020473-10021440	GM12878	blood:	n/a	n/a
18	POLR2A	chr4:10020835-10021893	HepG2	liver:	n/a	n/a
19	MAX	chr4:10020216-10021345	HCT-116	colon:	n/a	n/a
20	POLR2A	chr4:10020455-10021164	GM15510	blood:	n/a	n/a
21	POLR2A	chr4:10020352-10021664	GM12892	blood:	n/a	n/a
22	MAX	chr4:10020325-10021171	A549	lung:	n/a	n/a
23	MAX	chr4:10020321-10021216	ECC-1	luminal epithelium:	n/a	n/a
24	E2F6	chr4:10020317-10021351	H1-hESC	embryonic stem cell:	n/a	chr4:10020582-10020593
25	MAX	chr4:10020350-10021151	K562	blood:	n/a	n/a
26	E2F6	chr4:10020387-10021153	H1-hESC	embryonic stem cell:	n/a	chr4:10020582-10020593
27	ZNF263	chr4:10020444-10021270	HEK293-T-REx	kidney:	n/a	n/a
28	HCFC1	chr4:10020369-10021312	K562	blood:	n/a	n/a
29	POLR2A	chr4:10020577-10021182	GM12891	blood:	n/a	n/a
30	MAZ	chr4:10020221-10021298	IMR90	lung:	n/a	n/a
31	ZNF143	chr4:10021121-10021171	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr4:10020414-10021832	HepG2	liver:	n/a	n/a
33	MYC	chr4:10020381-10021154	K562	blood:	n/a	n/a
34	ELF1	chr4:10020389-10021177	K562	blood:	n/a	chr4:10020931-10020942
35	POLR2A	chr4:10020443-10021765	GM12892	blood:	n/a	n/a
36	MXI1	chr4:10020195-10021435	IMR90	lung:	n/a	n/a
37	USF2	chr4:10020365-10021246	H1-hESC	embryonic stem cell:	n/a	chr4:10020562-10020578
38	POLR2A	chr4:10020894-10022065	HepG2	liver:	n/a	n/a
39	RUNX3	chr4:10020339-10021198	GM12878	blood:	n/a	n/a
40	POLR2A	chr4:10020351-10021496	HL-60	blood:	n/a	n/a
41	CHD2	chr4:10020389-10021425	GM12878	blood:	n/a	n/a
42	POLR2A	chr4:10020466-10021185	HUVEC	blood vessel:	n/a	n/a
43	POLR2A	chr4:10020495-10021158	NB4	blood:	n/a	n/a
44	MYC	chr4:10020394-10021197	NB4	blood:	n/a	n/a
45	POLR2A	chr4:10020346-10021305	PFSK-1	brain:	n/a	n/a
46	JUN	chr4:10020330-10021405	K562	blood:	n/a	n/a
47	POLR2A	chr4:10020407-10021192	MCF10A-Er-Src	breast:	n/a	n/a
48	POLR2A	chr4:10020569-10021278	GM12892	blood:	n/a	n/a
49	MAX	chr4:10020336-10021200	H1-hESC	embryonic stem cell:	n/a	n/a
50	POLR2A	chr4:10020382-10021229	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:10019361..10022054-chr4:10108000..10110178,2	K562	blood:
2	chr4:10020622..10022306-chr4:10022841..10025006,2	MCF-7	breast:
3	chr4:10019661..10022849-chr4:10023062..10025452,3	K562	blood:

Variant related genes	Relation type
SLC2A9	TF binding region
ENSG00000109667	Chromatin interaction
ENSG00000071127	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10006397	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10016075	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10022499	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10023068	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs10516196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10516197	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10939650	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10939679	0.83[ASN][1000 genomes]
rs10939680	0.83[ASN][1000 genomes]
rs12108388	0.83[ASN][1000 genomes]
rs12499734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12641340	0.84[ASN][1000 genomes]
rs12642431	0.84[ASN][1000 genomes]
rs12642537	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13106922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112782	0.83[ASN][1000 genomes]
rs13113006	0.89[JPT][hapmap]
rs13114106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125476	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs13127630	0.83[ASN][1000 genomes]
rs13129697	0.86[JPT][hapmap]
rs13132625	0.82[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs13135351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13139970	0.85[JPT][hapmap]
rs13142273	0.86[JPT][hapmap]
rs13144899	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13148476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13151331	0.90[JPT][hapmap]
rs16891285	0.82[CHD][hapmap];0.90[JPT][hapmap]
rs16891489	0.90[JPT][hapmap]
rs16892419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16892420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16892449	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16892474	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16892475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16892493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2012177	0.81[JPT][hapmap]
rs2276962	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2276963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35201034	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs35249656	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35334203	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35782952	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36036984	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3756231	0.87[CHB][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs3756233	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3756234	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756235	0.84[ASN][1000 genomes]
rs3775939	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3775941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775943	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3796829	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs3822250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4312756	0.90[JPT][hapmap]
rs4333184	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4345181	0.81[AMR][1000 genomes]
rs4364264	0.82[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap]
rs4467565	0.90[JPT][hapmap]
rs4608811	0.83[ASN][1000 genomes]
rs4697701	0.81[JPT][hapmap]
rs55668232	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57897925	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59234705	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6820616	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6821843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6822023	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6822988	0.84[ASN][1000 genomes]
rs6826764	0.95[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6837659	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6846692	0.94[ASN][1000 genomes]
rs6853437	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs714873	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs733175	0.83[ASN][1000 genomes]
rs7349721	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7657096	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs7659924	0.83[ASN][1000 genomes]
rs7663032	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7669090	0.94[ASN][1000 genomes]
rs7675964	0.81[JPT][hapmap]
rs7677430	0.82[ASN][1000 genomes]
rs7678346	0.83[ASN][1000 genomes]
rs7683832	0.83[ASN][1000 genomes]
rs7685958	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9291640	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs938558	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
6	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
7	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
8	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
11	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
12	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
13	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
17	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
18	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
20	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
22	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
23	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
24	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
25	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
26	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
27	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
28	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
29	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
30	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
31	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
32	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
33	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
34	nsv593691	chr4:10013173-10050141	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv869057	chr4:10013411-10875454	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10010000-10021200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:10019600-10022200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:10020000-10021200	Active TSS	Fetal Brain Female	brain
4	chr4:10020000-10021400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:10020000-10021600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr4:10020200-10021200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:10020200-10021200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:10020200-10021200	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr4:10020200-10021200	Active TSS	Colon Smooth Muscle	Colon
10	chr4:10020200-10021200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
11	chr4:10020200-10021200	Active TSS	Ovary	ovary
12	chr4:10020200-10021200	Active TSS	Psoas Muscle	Psoas
13	chr4:10020200-10021400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr4:10020200-10021400	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr4:10020200-10021400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr4:10020200-10021400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:10020200-10021400	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr4:10020200-10021400	Flanking Active TSS	Colonic Mucosa	Colon
19	chr4:10020200-10021400	Active TSS	Fetal Kidney	kidney
20	chr4:10020200-10021400	Flanking Active TSS	Fetal Muscle Trunk	muscle
21	chr4:10020200-10021400	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr4:10020200-10024600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr4:10020400-10021200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:10020400-10021200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:10020400-10021200	Flanking Active TSS	Placenta	Placenta
26	chr4:10020400-10021200	Active TSS	Gastric	stomach
27	chr4:10020400-10021400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:10020400-10021400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:10020400-10021400	Flanking Active TSS	Pancreas	Pancrea
30	chr4:10020400-10021400	Active TSS	Placenta Amnion	Placenta Amnion
31	chr4:10020600-10021200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr4:10020600-10021200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:10020600-10021200	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr4:10020600-10021200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr4:10020600-10021200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:10020600-10021200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr4:10020600-10021200	Flanking Active TSS	Fetal Thymus	thymus
38	chr4:10020600-10021200	Flanking Active TSS	HUVEC	blood vessel
39	chr4:10020600-10021200	Flanking Active TSS	K562	blood
40	chr4:10020600-10021400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
41	chr4:10020600-10021400	Flanking Active TSS	Fetal Brain Male	brain
42	chr4:10020600-10021600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr4:10020600-10021600	Transcr. at gene 5' and 3'	HepG2	liver
44	chr4:10020600-10023400	Flanking Active TSS	Liver	Liver
45	chr4:10020800-10021200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr4:10020800-10021200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr4:10020800-10021200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
48	chr4:10020800-10021200	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr4:10020800-10021200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:10020800-10021200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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