Variant report

Variant	rs6853437
Chromosome Location	chr4:10005435-10005436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:10005289-10005602	MCF10A-Er-Src	breast:	n/a	n/a
2	EBF1	chr4:10005301-10005762	GM12878	blood:	n/a	n/a
3	ATF2	chr4:10005306-10005725	GM12878	blood:	n/a	n/a
4	RUNX3	chr4:10005256-10005784	GM12878	blood:	n/a	n/a
5	STAT3	chr4:10005362-10005653	MCF10A-Er-Src	breast:	n/a	n/a
6	EBF1	chr4:10005317-10005764	GM12878	blood:	n/a	n/a
7	FOXM1	chr4:10005291-10005804	GM12878	blood:	n/a	n/a
8	BCL3	chr4:10005262-10005711	GM12878	blood:	n/a	n/a
9	PAX5	chr4:10005251-10005715	GM12878	blood:	n/a	n/a
10	MYC	chr4:10005242-10005623	MCF10A-Er-Src	breast:	n/a	n/a
11	EBF1	chr4:10005249-10005780	GM12878	blood:	n/a	n/a
12	STAT3	chr4:10005345-10005523	MCF10A-Er-Src	breast:	n/a	n/a
13	IKZF1	chr4:10005329-10005768	GM12878	blood:	n/a	n/a
14	CTCF	chr4:10005400-10005747	GM12878	blood:	n/a	n/a
15	FOS	chr4:10005273-10005652	MCF10A-Er-Src	breast:	n/a	n/a
16	EP300	chr4:10005405-10005731	GM12878	blood:	n/a	n/a
17	PAX5	chr4:10005423-10005656	GM12878	blood:	n/a	n/a
18	FOS	chr4:10005241-10005654	MCF10A-Er-Src	breast:	n/a	n/a
19	STAT3	chr4:10005354-10005554	MCF10A-Er-Src	breast:	n/a	n/a
20	EP300	chr4:10005289-10005747	GM12878	blood:	n/a	n/a
21	NFIC	chr4:10005213-10005800	GM12878	blood:	n/a	n/a
22	FOS	chr4:10005272-10005547	MCF10A-Er-Src	breast:	n/a	n/a
23	BATF	chr4:10005411-10005658	GM12878	blood:	n/a	chr4:10005512-10005523
24	RUNX3	chr4:10005261-10005807	GM12878	blood:	n/a	n/a
25	ZNF143	chr4:10005418-10005662	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:9999663..10002309-chr4:10003898..10006601,3	MCF-7	breast:
2	chr4:10003454..10005588-chr4:10009688..10011673,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250413	TF binding region

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10006397	0.91[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10016075	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.96[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018663	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10018666	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023068	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1014290	0.86[MEX][hapmap]
rs10461113	0.87[ASN][1000 genomes]
rs10516196	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10516197	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10939650	0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes]
rs12499734	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs12641340	0.89[ASN][1000 genomes]
rs12642431	0.89[ASN][1000 genomes]
rs13106922	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs13112998	0.80[ASN][1000 genomes]
rs13113006	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs13122112	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs13125476	0.89[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs13129697	0.95[JPT][hapmap]
rs13132625	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs13135351	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs13139970	0.85[JPT][hapmap]
rs13142273	0.86[JPT][hapmap]
rs13144899	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13151331	0.91[JPT][hapmap]
rs16891285	0.91[JPT][hapmap]
rs16891489	0.91[JPT][hapmap]
rs16892419	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs16892420	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs16892474	0.87[CHB][hapmap]
rs16892475	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs16892493	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2012177	0.81[JPT][hapmap]
rs2240723	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs35201034	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs35817865	0.80[ASN][1000 genomes]
rs3756235	0.89[ASN][1000 genomes]
rs3775939	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs3775941	0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap]
rs3775942	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs3775943	0.89[ASN][1000 genomes]
rs3775944	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796829	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs3796835	0.85[EUR][1000 genomes]
rs3796838	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3822250	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4312756	0.91[JPT][hapmap]
rs4333184	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs4364264	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs4467565	0.90[JPT][hapmap]
rs4697701	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6821843	0.91[CHB][hapmap]
rs6822988	0.89[ASN][1000 genomes]
rs6826764	0.91[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs6846692	0.85[EUR][1000 genomes]
rs6856396	0.81[CEU][hapmap]
rs714873	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs71603979	0.80[ASN][1000 genomes]
rs7349721	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs751092	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7657096	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7663032	0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7666545	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7669090	0.85[EUR][1000 genomes]
rs7675964	0.91[JPT][hapmap]
rs9291640	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291641	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs938558	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533218	chr4:9371016-10252290	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	74 gene(s)	inside rSNPs	diseases
2	nsv530090	chr4:9383695-10165033	Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	nsv1014216	chr4:9713612-10223836	Transcr. at gene 5' and 3' Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv1010249	chr4:9716101-10086188	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv878672	chr4:9786732-10008305	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv878677	chr4:9797703-10008305	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878681	chr4:9802853-10397327	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
8	nsv997941	chr4:9805223-10493388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
9	nsv1008649	chr4:9805223-10589802	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1000587	chr4:9805223-10610752	Flanking Active TSS Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
11	nsv537022	chr4:9805223-10610752	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
12	nsv1003454	chr4:9805223-10710990	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
13	nsv537023	chr4:9805223-10710990	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv1004801	chr4:9814720-10674528	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
15	nsv537024	chr4:9814720-10674528	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
16	nsv931483	chr4:9814721-10716463	Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
17	esv2763339	chr4:9858426-10056376	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv878686	chr4:9893403-10008305	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv537026	chr4:9903566-10262258	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
20	nsv1009972	chr4:9903566-10710990	Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
21	nsv537027	chr4:9903566-10710990	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	esv2752052	chr4:9911872-10313111	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
23	nsv878687	chr4:9912101-10008305	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv878688	chr4:9915850-10038112	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv1010620	chr4:9937123-10686682	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
26	nsv878689	chr4:9943185-10008305	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv878690	chr4:9944650-10008305	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv530280	chr4:9947818-10940041	Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
29	nsv532706	chr4:9948018-10451450	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
30	nsv1013022	chr4:9961220-10230042	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
31	nsv537028	chr4:9961220-10230042	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
32	nsv537029	chr4:9961220-10262258	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
33	nsv878691	chr4:9966477-10418078	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
34	nsv1013487	chr4:9972011-10320963	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
35	nsv829857	chr4:9982514-10155835	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
36	nsv469621	chr4:9987670-10142287	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
37	nsv482719	chr4:9987670-10142287	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
38	nsv1008067	chr4:10004664-10262258	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases
39	nsv537030	chr4:10004664-10262258	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9980800-10007200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr4:9987600-10008000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:9991600-10007200	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:9992400-10006800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:9992600-10007200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:9993000-10006800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr4:9993200-10006800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr4:9993600-10008000	Weak transcription	Left Ventricle	heart
9	chr4:9997600-10007800	Genic enhancers	HepG2	liver
10	chr4:9998400-10008200	Weak transcription	Esophagus	oesophagus
11	chr4:9998400-10008400	Weak transcription	Brain Angular Gyrus	brain
12	chr4:9998400-10020400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:9998600-10006800	Weak transcription	Lung	lung
14	chr4:9999000-10007400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:9999000-10007400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:10001400-10006000	Enhancers	HMEC	breast
17	chr4:10001400-10007400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:10002400-10007400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:10002600-10007800	Weak transcription	Aorta	Aorta
20	chr4:10002600-10007800	Enhancers	GM12878-XiMat	blood
21	chr4:10002800-10006400	Enhancers	Stomach Mucosa	stomach
22	chr4:10003000-10006200	Enhancers	Duodenum Mucosa	Duodenum
23	chr4:10003400-10007800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:10003800-10007000	Weak transcription	Right Atrium	heart
25	chr4:10004400-10005800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr4:10004400-10006000	Genic enhancers	Fetal Intestine Small	intestine
27	chr4:10004400-10006800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:10004400-10007600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:10004400-10010200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:10004600-10007600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:10004600-10007600	Genic enhancers	NHEK	skin
32	chr4:10004600-10008200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr4:10004800-10006200	Weak transcription	Small Intestine	intestine
34	chr4:10004800-10007000	Genic enhancers	Fetal Intestine Large	intestine
35	chr4:10004800-10007000	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:10004800-10007400	Weak transcription	Colonic Mucosa	Colon
37	chr4:10004800-10007400	Weak transcription	Pancreas	Pancrea
38	chr4:10004800-10008200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:10005000-10006800	Weak transcription	Adipose Nuclei	Adipose
40	chr4:10005000-10007000	Weak transcription	Liver	Liver
41	chr4:10005000-10008600	Weak transcription	Gastric	stomach
42	chr4:10005200-10007200	Weak transcription	Fetal Lung	lung
43	chr4:10005200-10007400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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