Variant report

Variant	rs2245162
Chromosome Location	chr10:50210819-50210820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50210429..50211061-chr10:50369700..50370308,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1055583	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12775075	1.00[EUR][1000 genomes]
rs1877804	0.91[ASN][1000 genomes]
rs1877805	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs1913518	0.95[ASN][1000 genomes]
rs1913519	0.95[ASN][1000 genomes]
rs1913521	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1996185	0.95[ASN][1000 genomes]
rs2137920	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2175918	0.84[CHB][hapmap];1.00[CHD][hapmap]
rs2243994	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2244575	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2244967	0.95[ASN][1000 genomes]
rs2245145	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245147	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245149	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2245165	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2253873	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254384	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254393	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254410	0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254412	0.91[ASN][1000 genomes]
rs2254617	0.91[ASN][1000 genomes]
rs2254628	0.91[ASN][1000 genomes]
rs2254740	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2254754	0.91[ASN][1000 genomes]
rs2254863	0.92[ASN][1000 genomes]
rs2255253	0.94[ASN][1000 genomes]
rs2255360	0.97[ASN][1000 genomes]
rs2255739	0.98[ASN][1000 genomes]
rs2255943	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264555	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264844	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264848	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2264849	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2458672	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2466751	0.91[ASN][1000 genomes]
rs2466752	0.91[ASN][1000 genomes]
rs2466754	0.92[ASN][1000 genomes]
rs2466755	0.92[ASN][1000 genomes]
rs2725199	0.98[ASN][1000 genomes]
rs2955063	0.91[ASN][1000 genomes]
rs883017	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50206200-50211200	Enhancers	Fetal Intestine Small	intestine
2	chr10:50206600-50211000	Enhancers	Fetal Intestine Large	intestine
3	chr10:50209000-50211000	Enhancers	Ovary	ovary
4	chr10:50209600-50211000	Enhancers	Left Ventricle	heart
5	chr10:50210200-50215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:50210400-50213000	Weak transcription	Fetal Lung	lung
7	chr10:50210800-50215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:50210800-50216000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:50210800-50216000	Weak transcription	Right Atrium	heart
10	chr10:50210800-50216000	Weak transcription	Right Ventricle	heart
11	chr10:50210800-50219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:50210800-50223600	Weak transcription	Spleen	Spleen

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