Variant report

Variant	rs2255739
Chromosome Location	chr10:50215410-50215411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1055583	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877804	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1877805	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1913518	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913519	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1913521	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1996185	0.98[ASN][1000 genomes]
rs2137920	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2175918	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2243994	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2244575	0.94[ASN][1000 genomes]
rs2244967	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2245145	0.98[ASN][1000 genomes]
rs2245147	0.98[ASN][1000 genomes]
rs2245149	0.98[ASN][1000 genomes]
rs2245162	0.98[ASN][1000 genomes]
rs2245165	0.94[ASN][1000 genomes]
rs2253873	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254384	0.94[ASN][1000 genomes]
rs2254393	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254409	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2254410	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254412	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254617	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254628	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254740	0.94[ASN][1000 genomes]
rs2254754	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2254863	0.94[ASN][1000 genomes]
rs2255253	0.97[ASN][1000 genomes]
rs2255360	0.99[ASN][1000 genomes]
rs2255943	0.98[ASN][1000 genomes]
rs2264555	0.98[ASN][1000 genomes]
rs2264844	0.98[ASN][1000 genomes]
rs2264848	0.94[ASN][1000 genomes]
rs2264849	0.94[ASN][1000 genomes]
rs2458672	0.98[ASN][1000 genomes]
rs2466751	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2466752	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2466754	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2466755	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955063	0.93[ASN][1000 genomes]
rs883017	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50210800-50216000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:50210800-50216000	Weak transcription	Right Atrium	heart
3	chr10:50210800-50216000	Weak transcription	Right Ventricle	heart
4	chr10:50210800-50219800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50210800-50223600	Weak transcription	Spleen	Spleen
6	chr10:50211000-50216200	Weak transcription	Fetal Intestine Large	intestine
7	chr10:50211200-50216200	Weak transcription	Fetal Intestine Small	intestine
8	chr10:50213400-50223000	Enhancers	Ovary	ovary
9	chr10:50213800-50216200	Weak transcription	Adipose Nuclei	Adipose
10	chr10:50215000-50219400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:50215200-50218400	Enhancers	Fetal Brain Male	brain
12	chr10:50215200-50222400	Enhancers	Left Ventricle	heart
13	chr10:50215400-50215800	Enhancers	Psoas Muscle	Psoas
14	chr10:50215400-50215800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:50215400-50216000	Weak transcription	Fetal Lung	lung
16	chr10:50215400-50219400	Enhancers	Fetal Stomach	stomach

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