Variant report

Variant	rs2955063
Chromosome Location	chr10:50228748-50228749
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50225099..50226712-chr10:50226883..50229735,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1055583	0.95[ASN][1000 genomes]
rs1877804	0.91[ASN][1000 genomes]
rs1877805	0.91[ASN][1000 genomes]
rs1913518	0.95[ASN][1000 genomes]
rs1913519	0.95[ASN][1000 genomes]
rs1913521	0.91[ASN][1000 genomes]
rs1996185	0.95[ASN][1000 genomes]
rs2137920	0.92[ASN][1000 genomes]
rs2243994	0.91[ASN][1000 genomes]
rs2244575	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2244967	0.95[ASN][1000 genomes]
rs2245145	0.91[ASN][1000 genomes]
rs2245147	0.91[ASN][1000 genomes]
rs2245149	0.91[ASN][1000 genomes]
rs2245162	0.91[ASN][1000 genomes]
rs2245165	0.88[ASN][1000 genomes]
rs2253873	0.91[ASN][1000 genomes]
rs2254384	0.91[ASN][1000 genomes]
rs2254393	0.91[ASN][1000 genomes]
rs2254410	0.91[ASN][1000 genomes]
rs2254412	0.91[ASN][1000 genomes]
rs2254617	0.91[ASN][1000 genomes]
rs2254628	0.91[ASN][1000 genomes]
rs2254740	0.91[ASN][1000 genomes]
rs2254754	0.91[ASN][1000 genomes]
rs2254863	0.92[ASN][1000 genomes]
rs2255253	0.91[ASN][1000 genomes]
rs2255360	0.94[ASN][1000 genomes]
rs2255739	0.93[ASN][1000 genomes]
rs2255943	0.91[ASN][1000 genomes]
rs2264555	0.91[ASN][1000 genomes]
rs2264844	0.91[ASN][1000 genomes]
rs2264848	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2264849	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2458672	0.91[ASN][1000 genomes]
rs2466751	0.91[ASN][1000 genomes]
rs2466752	0.91[ASN][1000 genomes]
rs2466754	0.92[ASN][1000 genomes]
rs2466755	0.92[ASN][1000 genomes]
rs2725199	0.93[ASN][1000 genomes]
rs883017	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50217400-50231200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:50218600-50238200	Weak transcription	Esophagus	oesophagus
3	chr10:50218800-50231400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:50220400-50233600	Weak transcription	Gastric	stomach
5	chr10:50220800-50231200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:50221000-50233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50221800-50231400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:50221800-50232400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:50222000-50231400	Weak transcription	Right Ventricle	heart
10	chr10:50222000-50233800	Weak transcription	Lung	lung
11	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:50223000-50231600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:50223000-50231600	Weak transcription	Left Ventricle	heart
14	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
15	chr10:50224200-50231600	Weak transcription	Fetal Kidney	kidney
16	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:50224600-50244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:50225800-50231200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:50227200-50231400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:50227200-50231400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:50227200-50231600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:50227200-50231600	Weak transcription	Placenta	Placenta
23	chr10:50227400-50231400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:50227800-50229200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:50227800-50231200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:50227800-50231200	Weak transcription	Fetal Muscle Leg	muscle
27	chr10:50227800-50231200	Weak transcription	Fetal Stomach	stomach
28	chr10:50227800-50231400	Weak transcription	Ovary	ovary
29	chr10:50227800-50231600	Weak transcription	Fetal Intestine Small	intestine
30	chr10:50227800-50231600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:50227800-50232400	Weak transcription	Aorta	Aorta
32	chr10:50227800-50237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:50227800-50238800	Weak transcription	HSMMtube	muscle
34	chr10:50227800-50243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:50228000-50230800	Weak transcription	Fetal Lung	lung
36	chr10:50228000-50231600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:50228600-50229000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland

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