Variant report

Variant	rs2245165
Chromosome Location	chr10:50210633-50210634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50194012..50196648-chr10:50208584..50210645,2	MCF-7	breast:
2	chr10:50210429..50211061-chr10:50369700..50370308,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1055583	0.92[ASN][1000 genomes]
rs12775075	0.97[EUR][1000 genomes]
rs1877804	0.88[ASN][1000 genomes]
rs1877805	0.88[ASN][1000 genomes]
rs1913518	0.92[ASN][1000 genomes]
rs1913519	0.92[ASN][1000 genomes]
rs1913521	0.88[ASN][1000 genomes]
rs1996185	0.92[ASN][1000 genomes]
rs2137920	0.89[ASN][1000 genomes]
rs2243994	0.88[ASN][1000 genomes]
rs2244575	0.89[ASN][1000 genomes]
rs2244967	0.92[ASN][1000 genomes]
rs2245145	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2245147	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2245149	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2245162	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2253873	0.88[ASN][1000 genomes]
rs2254384	0.88[ASN][1000 genomes]
rs2254393	0.88[ASN][1000 genomes]
rs2254410	0.88[ASN][1000 genomes]
rs2254412	0.88[ASN][1000 genomes]
rs2254617	0.88[ASN][1000 genomes]
rs2254628	0.88[ASN][1000 genomes]
rs2254740	0.88[ASN][1000 genomes]
rs2254754	0.88[ASN][1000 genomes]
rs2254863	0.89[ASN][1000 genomes]
rs2255253	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2255360	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2255739	0.94[ASN][1000 genomes]
rs2255943	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2264555	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2264844	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2264848	0.88[ASN][1000 genomes]
rs2264849	0.88[ASN][1000 genomes]
rs2458672	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2466751	0.88[ASN][1000 genomes]
rs2466752	0.88[ASN][1000 genomes]
rs2466754	0.89[ASN][1000 genomes]
rs2466755	0.89[ASN][1000 genomes]
rs2725199	0.94[ASN][1000 genomes]
rs2955063	0.88[ASN][1000 genomes]
rs883017	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50206200-50211200	Enhancers	Fetal Intestine Small	intestine
2	chr10:50206600-50211000	Enhancers	Fetal Intestine Large	intestine
3	chr10:50208600-50210800	Enhancers	Right Ventricle	heart
4	chr10:50209000-50211000	Enhancers	Ovary	ovary
5	chr10:50209600-50210800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:50209600-50210800	Enhancers	Spleen	Spleen
7	chr10:50209600-50211000	Enhancers	Left Ventricle	heart
8	chr10:50209800-50210800	Enhancers	Fetal Muscle Leg	muscle
9	chr10:50210200-50210800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:50210200-50215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:50210400-50210800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:50210400-50213000	Weak transcription	Fetal Lung	lung
13	chr10:50210600-50210800	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:50210600-50210800	ZNF genes & repeats	Right Atrium	heart

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