Variant report

Variant rs2252960
Chromosome Location chr6:29931940-29931941
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29913400-29932200 Weak transcription Brain Anterior Caudate brain
2 chr6:29913400-29932600 Weak transcription Brain Substantia Nigra brain
3 chr6:29913800-29932200 Weak transcription Small Intestine intestine
4 chr6:29914000-29932200 Weak transcription Colon Smooth Muscle Colon
5 chr6:29914600-29932200 Weak transcription Colonic Mucosa Colon
6 chr6:29914800-29932200 Weak transcription Right Ventricle heart
7 chr6:29915600-29932000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr6:29916800-29932200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr6:29916800-29932200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr6:29916800-29932200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr6:29916800-29933000 Weak transcription Esophagus oesophagus
12 chr6:29916800-29933000 Weak transcription Pancreas Pancrea
13 chr6:29916800-29933200 Weak transcription Lung lung
14 chr6:29916800-29940200 Weak transcription Gastric stomach
15 chr6:29917200-29932000 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr6:29917200-29932200 Weak transcription Liver Liver
17 chr6:29917200-29932200 Weak transcription Brain Hippocampus Middle brain
18 chr6:29917800-29932200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr6:29918000-29932000 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr6:29918000-29932200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr6:29918000-29932200 Weak transcription Fetal Intestine Small intestine
22 chr6:29920400-29932200 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr6:29921800-29932200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr6:29924600-29932200 Weak transcription Left Ventricle heart
25 chr6:29924600-29932200 Weak transcription Right Atrium heart
26 chr6:29924800-29932200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr6:29924800-29933000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
28 chr6:29926200-29932600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr6:29927800-29932000 Weak transcription Primary B cells from cord blood blood
30 chr6:29927800-29932000 Weak transcription GM12878-XiMat blood
31 chr6:29927800-29932200 Weak transcription Primary B cells from peripheral blood blood
32 chr6:29927800-29938800 Weak transcription Spleen Spleen
33 chr6:29928400-29932200 Weak transcription Fetal Muscle Leg muscle
34 chr6:29928600-29932000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr6:29929000-29932000 Weak transcription HepG2 liver
36 chr6:29929400-29932200 Weak transcription Pancreatic Islets Pancreatic Islet
37 chr6:29930000-29932000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr6:29930000-29932200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr6:29930000-29932200 Weak transcription Psoas Muscle Psoas
40 chr6:29930200-29932200 Weak transcription Fetal Lung lung
41 chr6:29930200-29932200 Weak transcription Monocytes-CD14+_RO01746 blood
42 chr6:29930400-29932000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr6:29930400-29932200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr6:29930600-29932000 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr6:29930800-29932200 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr6:29930800-29932200 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr6:29931200-29932200 Enhancers Primary hematopoietic stem cells short term culture blood
48 chr6:29931200-29932200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
49 chr6:29931400-29932000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
50 chr6:29931600-29932200 Enhancers Dnd41 blood

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