Variant report
| Variant | rs225739 |
|---|---|
| Chromosome Location | chr6:142561361-142561362 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs225712 | 0.81[EUR][1000 genomes] |
| rs225714 | 0.80[EUR][1000 genomes] |
| rs225715 | 0.81[EUR][1000 genomes] |
| rs225716 | 0.81[EUR][1000 genomes] |
| rs225717 | 0.81[EUR][1000 genomes] |
| rs225718 | 0.81[EUR][1000 genomes] |
| rs225719 | 0.82[EUR][1000 genomes] |
| rs225721 | 0.82[EUR][1000 genomes] |
| rs225722 | 0.82[EUR][1000 genomes] |
| rs225723 | 0.80[EUR][1000 genomes] |
| rs225724 | 0.82[EUR][1000 genomes] |
| rs225726 | 0.82[EUR][1000 genomes] |
| rs225727 | 0.82[EUR][1000 genomes] |
| rs225729 | 0.82[EUR][1000 genomes] |
| rs225730 | 0.82[EUR][1000 genomes] |
| rs225731 | 0.82[EUR][1000 genomes] |
| rs225732 | 0.82[EUR][1000 genomes] |
| rs225733 | 0.82[EUR][1000 genomes] |
| rs225736 | 0.81[EUR][1000 genomes] |
| rs225737 | 0.82[EUR][1000 genomes] |
| rs225738 | 0.82[EUR][1000 genomes] |
| rs225740 | 0.82[EUR][1000 genomes] |
| rs225741 | 0.82[EUR][1000 genomes] |
| rs225743 | 0.82[EUR][1000 genomes] |
| rs225744 | 0.81[EUR][1000 genomes] |
| rs225745 | 0.82[EUR][1000 genomes] |
| rs225746 | 0.82[EUR][1000 genomes] |
| rs225747 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv5511 | chr6:142550032-142594960 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142560600-142561600 | Weak transcription | Fetal Heart | heart |
