Variant report

Variant	rs225726
Chromosome Location	chr6:142553921-142553922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs225625	0.81[EUR][1000 genomes]
rs225626	0.81[EUR][1000 genomes]
rs225627	0.81[EUR][1000 genomes]
rs225638	0.81[EUR][1000 genomes]
rs225646	0.81[EUR][1000 genomes]
rs225647	0.81[EUR][1000 genomes]
rs225649	0.81[EUR][1000 genomes]
rs225694	0.96[EUR][1000 genomes]
rs225712	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225714	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225715	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225716	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225717	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225718	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225719	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225720	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225721	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225722	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225723	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs225724	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225727	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225729	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225730	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225731	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225732	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225733	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225736	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs225737	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225738	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225739	0.82[EUR][1000 genomes]
rs225740	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225741	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225743	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225744	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225745	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225747	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs225748	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5511	chr6:142550032-142594960	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142552800-142554000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:142552800-142554200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:142553200-142554800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:142553400-142554000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:142553400-142554000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr6:142553400-142554000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:142553400-142554000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:142553400-142554000	Enhancers	Fetal Intestine Large	intestine
9	chr6:142553400-142554200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:142553400-142554200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:142553400-142554200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:142553600-142554000	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:142553600-142554000	Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr6:142553600-142554000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:142553600-142554000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:142553600-142554000	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:142553600-142554000	Active TSS	HepG2	liver
18	chr6:142553600-142554200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:142553600-142554200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:142553600-142554200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:142553600-142554200	Flanking Active TSS	Pancreas	Pancrea
22	chr6:142553600-142554400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:142553600-142556600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:142553800-142554000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr6:142553800-142554200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:142553800-142554200	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr6:142553800-142554200	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr6:142553800-142554200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:142553800-142554200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:142553800-142554200	Flanking Active TSS	Fetal Intestine Small	intestine
31	chr6:142553800-142554200	Enhancers	Fetal Thymus	thymus

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