Variant report

Variant	rs225712
Chromosome Location	chr6:142545280-142545281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10457739	1.00[YRI][hapmap]
rs11155234	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs11755163	1.00[YRI][hapmap]
rs225625	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs225626	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs225627	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs225638	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs225646	0.82[EUR][1000 genomes]
rs225647	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs225649	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs225694	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[EUR][1000 genomes]
rs225714	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225715	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225718	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225719	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225720	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs225721	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225722	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225723	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs225724	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225726	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225727	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs225729	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225730	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225731	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225732	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225733	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225736	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs225737	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225738	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225739	0.81[EUR][1000 genomes]
rs225740	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225741	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225743	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225744	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225745	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225746	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225747	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225748	0.85[EUR][1000 genomes]
rs6570507	1.00[YRI][hapmap]
rs6570508	1.00[YRI][hapmap]
rs9389986	1.00[YRI][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142496600-142546800	Weak transcription	NHLF	lung
2	chr6:142535000-142545600	Weak transcription	Aorta	Aorta
3	chr6:142535000-142548800	Weak transcription	NH-A	brain
4	chr6:142535200-142545600	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:142535200-142546000	Weak transcription	Fetal Stomach	stomach
6	chr6:142535200-142548800	Weak transcription	Left Ventricle	heart
7	chr6:142535200-142552800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:142535400-142546800	Weak transcription	Fetal Intestine Large	intestine
9	chr6:142535600-142546200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:142535800-142553400	Weak transcription	Thymus	Thymus
11	chr6:142536000-142552800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:142536400-142546600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:142539800-142546400	Weak transcription	Fetal Lung	lung
14	chr6:142540200-142546400	Weak transcription	Osteobl	bone
15	chr6:142540200-142546600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:142540200-142548400	Weak transcription	Placenta	Placenta
17	chr6:142540800-142546400	Weak transcription	Liver	Liver
18	chr6:142541200-142552800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:142541200-142553200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:142541200-142553400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:142541400-142552800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:142541600-142545800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:142541600-142546600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:142541800-142547000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:142541800-142550600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:142541800-142553200	Weak transcription	HepG2	liver
27	chr6:142542400-142547600	Weak transcription	Fetal Thymus	thymus
28	chr6:142542400-142550400	Weak transcription	Primary B cells from cord blood	blood
29	chr6:142542800-142553600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:142545200-142546400	Weak transcription	Esophagus	oesophagus

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