Variant report
| Variant | rs225748 |
|---|---|
| Chromosome Location | chr6:142563242-142563243 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:142556063..142558298-chr6:142562723..142565350,3 | K562 | blood: | |
| 2 | chr6:142562845..142565583-chr6:142567403..142569792,2 | K562 | blood: | |
| 3 | chr6:142561318..142563576-chr6:142567229..142569702,2 | MCF-7 | breast: | |
| 4 | chr6:142561290..142563575-chr6:142573357..142576182,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs225694 | 0.83[EUR][1000 genomes] |
| rs225712 | 0.85[EUR][1000 genomes] |
| rs225714 | 0.84[EUR][1000 genomes] |
| rs225715 | 0.85[EUR][1000 genomes] |
| rs225716 | 0.85[EUR][1000 genomes] |
| rs225717 | 0.85[EUR][1000 genomes] |
| rs225718 | 0.85[EUR][1000 genomes] |
| rs225719 | 0.86[EUR][1000 genomes] |
| rs225720 | 0.82[EUR][1000 genomes] |
| rs225721 | 0.86[EUR][1000 genomes] |
| rs225722 | 0.86[EUR][1000 genomes] |
| rs225723 | 0.84[EUR][1000 genomes] |
| rs225724 | 0.85[EUR][1000 genomes] |
| rs225726 | 0.86[EUR][1000 genomes] |
| rs225727 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225729 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225730 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225731 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225732 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225733 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225736 | 0.84[EUR][1000 genomes] |
| rs225737 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225738 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225740 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225741 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225743 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225744 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs225745 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225746 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs225747 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv5511 | chr6:142550032-142594960 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | esv3439903 | chr6:142563213-142563691 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142563000-142564200 | Enhancers | Placenta | Placenta |
