Variant report

Variant	rs225714
Chromosome Location	chr6:142546938-142546939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142546061..142548979-chr6:142618829..142620603,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11155234	0.94[CEU][hapmap]
rs225625	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs225626	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs225627	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs225638	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs225646	0.81[EUR][1000 genomes]
rs225647	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs225649	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs225694	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs225712	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225715	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225716	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225717	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225718	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225719	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs225720	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs225721	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225722	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225723	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs225724	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225726	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225727	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs225729	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225730	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225731	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225732	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225733	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225736	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs225737	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225738	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225739	0.80[EUR][1000 genomes]
rs225740	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225741	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225743	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225744	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225745	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225746	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225747	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs225748	0.84[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142535000-142548800	Weak transcription	NH-A	brain
2	chr6:142535200-142548800	Weak transcription	Left Ventricle	heart
3	chr6:142535200-142552800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:142535800-142553400	Weak transcription	Thymus	Thymus
5	chr6:142536000-142552800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:142540200-142548400	Weak transcription	Placenta	Placenta
7	chr6:142541200-142552800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:142541200-142553200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr6:142541200-142553400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:142541400-142552800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:142541800-142547000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:142541800-142550600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:142541800-142553200	Weak transcription	HepG2	liver
14	chr6:142542400-142547600	Weak transcription	Fetal Thymus	thymus
15	chr6:142542400-142550400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:142542800-142553600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:142546800-142547000	Enhancers	NHLF	lung

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