Variant report

Variant	rs2260365
Chromosome Location	chr20:23910015-23910016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1361631	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1797042	0.93[ASN][1000 genomes]
rs2145970	0.84[AFR][1000 genomes]
rs2145971	0.86[AFR][1000 genomes]
rs2208661	0.86[AFR][1000 genomes]
rs2224548	0.84[AFR][1000 genomes]
rs2258909	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260317	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2260409	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260451	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260455	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2261399	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2983538	1.00[ASN][1000 genomes]
rs2995100	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2995685	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs3004159	1.00[ASN][1000 genomes]
rs3004160	1.00[ASN][1000 genomes]
rs4815252	0.86[AFR][1000 genomes]
rs4815259	0.84[AFR][1000 genomes]
rs4815260	0.84[AFR][1000 genomes]
rs6049256	0.86[AFR][1000 genomes]
rs6049259	0.86[AFR][1000 genomes]
rs6049260	0.86[AFR][1000 genomes]
rs6049272	0.84[AFR][1000 genomes]
rs6049275	0.80[AFR][1000 genomes]
rs6049276	0.80[AFR][1000 genomes]
rs6076168	0.86[AFR][1000 genomes]
rs6083338	0.83[AFR][1000 genomes]
rs6106762	0.80[AFR][1000 genomes]
rs6132685	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23905600-23910200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:23905800-23910200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr20:23906400-23910200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr20:23906400-23910200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr20:23907800-23910200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr20:23907800-23910200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr20:23909600-23910200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr20:23910000-23912800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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