Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1361631	0.94[ASN][1000 genomes]
rs1797042	0.90[ASN][1000 genomes]
rs2145970	0.85[AFR][1000 genomes]
rs2145971	0.86[AFR][1000 genomes]
rs2208661	0.86[AFR][1000 genomes]
rs2224548	0.85[AFR][1000 genomes]
rs2258909	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2260317	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260365	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2260409	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2260451	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2260455	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2983538	0.97[ASN][1000 genomes]
rs2995100	0.98[ASN][1000 genomes]
rs2995685	0.96[ASN][1000 genomes]
rs3004159	0.97[ASN][1000 genomes]
rs3004160	0.97[ASN][1000 genomes]
rs4815252	0.86[AFR][1000 genomes]
rs4815259	0.85[AFR][1000 genomes]
rs4815260	0.85[AFR][1000 genomes]
rs6049256	0.86[AFR][1000 genomes]
rs6049259	0.86[AFR][1000 genomes]
rs6049260	0.86[AFR][1000 genomes]
rs6049272	0.85[AFR][1000 genomes]
rs6076168	0.86[AFR][1000 genomes]
rs6083338	0.83[AFR][1000 genomes]
rs755031	0.80[AFR][1000 genomes]
rs755033	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23902000-23907800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr20:23902000-23907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr20:23902200-23907200	Weak transcription	NHDF-Ad	bronchial
4	chr20:23902400-23909200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:23902600-23906400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr20:23902600-23907600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr20:23902600-23909200	Weak transcription	Fetal Thymus	thymus
8	chr20:23902800-23905800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr20:23904400-23907000	Enhancers	Pancreas	Pancrea
10	chr20:23904600-23906000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:23905400-23909200	Enhancers	Primary T cells fromperipheralblood	blood

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