Variant report

Variant	rs2263300
Chromosome Location	chr6:30935059-30935060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30933073..30935276-chr6:30939981..30942596,3	K562	blood:
2	chr6:30923951..30926322-chr6:30933415..30935428,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs2108775	1.00[ASN][1000 genomes]
rs2248481	1.00[ASN][1000 genomes]
rs2249168	0.85[ASN][1000 genomes]
rs2252921	0.82[ASN][1000 genomes]
rs2252925	0.82[ASN][1000 genomes]
rs2252926	0.82[ASN][1000 genomes]
rs2253417	0.82[ASN][1000 genomes]
rs2255625	1.00[ASN][1000 genomes]
rs2255626	1.00[ASN][1000 genomes]
rs2255719	1.00[ASN][1000 genomes]
rs2256514	0.82[ASN][1000 genomes]
rs2263299	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263301	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263302	1.00[ASN][1000 genomes]
rs2263303	1.00[ASN][1000 genomes]
rs2263304	1.00[ASN][1000 genomes]
rs2263305	0.82[ASN][1000 genomes]
rs2263306	0.82[ASN][1000 genomes]
rs2394857	1.00[ASN][1000 genomes]
rs2429295	0.82[ASN][1000 genomes]
rs2508019	1.00[ASN][1000 genomes]
rs2508020	1.00[ASN][1000 genomes]
rs2517406	0.82[ASN][1000 genomes]
rs2517409	0.82[ASN][1000 genomes]
rs2517411	0.85[ASN][1000 genomes]
rs2517412	0.85[ASN][1000 genomes]
rs2517415	0.85[ASN][1000 genomes]
rs2517416	0.85[ASN][1000 genomes]
rs2517418	1.00[ASN][1000 genomes]
rs2517419	1.00[ASN][1000 genomes]
rs2517420	1.00[ASN][1000 genomes]
rs2517421	1.00[ASN][1000 genomes]
rs2517422	1.00[ASN][1000 genomes]
rs2517424	1.00[ASN][1000 genomes]
rs2517426	1.00[ASN][1000 genomes]
rs2517428	1.00[ASN][1000 genomes]
rs2517430	1.00[ASN][1000 genomes]
rs2517432	0.99[ASN][1000 genomes]
rs2517434	1.00[ASN][1000 genomes]
rs2517435	1.00[ASN][1000 genomes]
rs2517436	1.00[ASN][1000 genomes]
rs2517437	1.00[ASN][1000 genomes]
rs2517439	1.00[ASN][1000 genomes]
rs2517441	1.00[ASN][1000 genomes]
rs2517442	0.95[ASN][1000 genomes]
rs2517444	1.00[ASN][1000 genomes]
rs2517445	1.00[ASN][1000 genomes]
rs2517446	1.00[ASN][1000 genomes]
rs2517447	0.97[ASN][1000 genomes]
rs2523907	0.82[ASN][1000 genomes]
rs2523908	0.82[ASN][1000 genomes]
rs2523909	0.81[ASN][1000 genomes]
rs2523911	0.82[ASN][1000 genomes]
rs2523912	0.82[ASN][1000 genomes]
rs2523913	0.82[ASN][1000 genomes]
rs2523927	1.00[ASN][1000 genomes]
rs2523928	1.00[ASN][1000 genomes]
rs2523929	1.00[ASN][1000 genomes]
rs2523930	0.85[ASN][1000 genomes]
rs2530688	0.82[ASN][1000 genomes]
rs2530689	0.82[ASN][1000 genomes]
rs2530690	0.82[ASN][1000 genomes]
rs2530694	0.85[ASN][1000 genomes]
rs2530695	0.85[ASN][1000 genomes]
rs2530699	1.00[ASN][1000 genomes]
rs2530700	1.00[ASN][1000 genomes]
rs2530701	1.00[ASN][1000 genomes]
rs2530702	1.00[ASN][1000 genomes]
rs2530703	1.00[ASN][1000 genomes]
rs2530705	0.99[ASN][1000 genomes]
rs2530706	1.00[ASN][1000 genomes]
rs2530708	1.00[ASN][1000 genomes]
rs2844675	0.85[ASN][1000 genomes]
rs2844676	0.85[ASN][1000 genomes]
rs2844678	0.97[ASN][1000 genomes]
rs2844679	1.00[ASN][1000 genomes]
rs2844682	1.00[ASN][1000 genomes]
rs2844684	0.99[ASN][1000 genomes]
rs2844685	1.00[ASN][1000 genomes]
rs2844686	1.00[ASN][1000 genomes]
rs2844687	1.00[ASN][1000 genomes]
rs2844688	1.00[ASN][1000 genomes]
rs2844689	1.00[ASN][1000 genomes]
rs2844690	1.00[ASN][1000 genomes]
rs2844691	1.00[ASN][1000 genomes]
rs2844692	1.00[ASN][1000 genomes]
rs2844693	1.00[ASN][1000 genomes]
rs2844694	1.00[ASN][1000 genomes]
rs3131928	0.82[ASN][1000 genomes]
rs3131929	0.82[ASN][1000 genomes]
rs380808	0.82[ASN][1000 genomes]
rs436376	0.82[ASN][1000 genomes]
rs9262315	1.00[ASN][1000 genomes]
rs9262446	0.82[ASN][1000 genomes]
rs9262450	0.82[ASN][1000 genomes]
rs9262451	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1031677	chr6:30857542-30972865	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv462743	chr6:30905313-30957766	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv601483	chr6:30905313-30957766	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv462744	chr6:30920890-30955681	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv601484	chr6:30920890-30955681	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30932200-30949800	Weak transcription	Right Atrium	heart
2	chr6:30933000-30939800	Weak transcription	Esophagus	oesophagus
3	chr6:30933000-30950200	Weak transcription	Gastric	stomach

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