Variant report

Variant	rs2517424
Chromosome Location	chr6:30949996-30949997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr6:30949695-30950042	H1-hESC	embryonic stem cell:	n/a	n/a
2	KAP1	chr6:30949691-30950423	U2OS	brain:	n/a	n/a
3	ZNF143	chr6:30949681-30950037	H1-hESC	embryonic stem cell:	n/a	n/a
4	FOS	chr6:30949869-30950142	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr6:30949890-30950162	MCF10A-Er-Src	breast:	n/a	n/a
6	RAD21	chr6:30949584-30950064	H1-hESC	embryonic stem cell:	n/a	n/a
7	STAT3	chr6:30949954-30950154	MCF10A-Er-Src	breast:	n/a	chr6:30949972-30949981 chr6:30949973-30949982 chr6:30949971-30949982
8	STAT3	chr6:30949638-30950190	MCF10A-Er-Src	breast:	n/a	chr6:30949972-30949981 chr6:30949973-30949982 chr6:30949971-30949982
9	CTCF	chr6:30949639-30950025	H1-hESC	embryonic stem cell:	n/a	chr6:30949880-30949893
10	CHD2	chr6:30949721-30950028	H1-hESC	embryonic stem cell:	n/a	n/a
11	SIN3A	chr6:30949674-30950054	H1-hESC	embryonic stem cell:	n/a	n/a
12	STAT3	chr6:30949635-30950228	MCF10A-Er-Src	breast:	n/a	chr6:30949972-30949981 chr6:30949973-30949982 chr6:30949971-30949982
13	ZNF263	chr6:30949855-30950830	HEK293-T-REx	kidney:	n/a	chr6:30950643-30950652
14	FOS	chr6:30949851-30950196	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr6:30949941-30950380	SK-N-SH	brain:	n/a	n/a
16	STAT3	chr6:30949656-30950198	MCF10A-Er-Src	breast:	n/a	chr6:30949972-30949981 chr6:30949973-30949982 chr6:30949971-30949982
17	RAD21	chr6:30949667-30950185	SK-N-SH_RA	brain:	n/a	n/a
18	SIN3AK20	chr6:30949637-30950074	SK-N-SH	brain:	n/a	n/a
19	TAF1	chr6:30949942-30950265	SK-N-SH	brain:	n/a	n/a
20	RAD21	chr6:30949605-30950015	H1-hESC	embryonic stem cell:	n/a	n/a
21	FOS	chr6:30949776-30950166	MCF10A-Er-Src	breast:	n/a	n/a
22	KAP1	chr6:30949680-30950268	HEK293	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30949988-30950038	BJ	skin:	n/a
2	chr6:30949988-30950038	AG09319	gingival:	n/a
3	chr6:30949988-30950038	GM12891	blood:	n/a
4	chr6:30949988-30950038	NHBE	bronchial:	n/a
5	chr6:30949988-30950038	AG10803	skin:	n/a
6	chr6:30949988-30950038	Jurkat	blood:	n/a
7	chr6:30949988-30950038	HepG2	liver:	n/a
8	chr6:30949988-30950038	PrEC	prostate:	n/a
9	chr6:30949988-30950038	HPAEpiC	pulmonary alveolar:	n/a
10	chr6:30949988-30950038	HRE	kidney:	n/a
11	chr6:30949988-30950038	HEK293	kidney:	embryo
12	chr6:30949988-30950038	GM19239	blood:	n/a
13	chr6:30949988-30950038	CMK	blood:	n/a
14	chr6:30949988-30950038	RPTEC	kidney:	n/a
15	chr6:30949988-30950038	SAEC	small airway:	n/a
16	chr6:30949988-30950038	A549	lung:	n/a
17	chr6:30949988-30950038	IMR90	lung:	fetal
18	chr6:30949988-30950038	MCF10A-Er-Src	breast:	n/a
19	chr6:30949988-30950038	SK-N-SH	brain:	n/a
20	chr6:30949988-30950038	HNPCEpiC	eye:	n/a
21	chr6:30949988-30950038	Hela-S3	cervix:	n/a
22	chr6:30949988-30950038	HAEpiC	amniotic membrane:	n/a
23	chr6:30949988-30950038	ovcar-3	ovarian:	n/a
24	chr6:30949988-30950038	HEEpiC	esophagus:	n/a
25	chr6:30949988-30950038	U87	brain:	n/a
26	chr6:30949988-30950038	AG04449	skin:	fetal
27	chr6:30949988-30950038	MCF-7	breast:	n/a
28	chr6:30949988-30950038	HCF	heart:	n/a
29	chr6:30949988-30950038	PFSK-1	brain:	n/a
30	chr6:30949988-30950038	HCM	heart:	n/a
31	chr6:30949988-30950038	HRPEpiC	eye:	n/a
32	chr6:30949988-30950038	SK-N-MC	brain:	n/a
33	chr6:30949988-30950038	AG04450	lung:	fetal
34	chr6:30949988-30950038	ProgFib	skin:	n/a
35	chr6:30949988-30950038	AoSMC	blood vessel:	n/a
36	chr6:30949988-30950038	LNCaP	prostate:	n/a
37	chr6:30949988-30950038	PANC-1	pancreas:	n/a
38	chr6:30949988-30950038	T-47D	breast:	n/a
39	chr6:30949988-30950038	NH-A	brain:	n/a
40	chr6:30949988-30950038	K562	blood:	n/a
41	chr6:30949988-30950038	BE2_C	brain:	n/a
42	chr6:30949988-30950038	Hepatocyte	liver:	n/a
43	chr6:30949988-30950038	HCPEpiC	choroid plexus:	n/a
44	chr6:30949988-30950038	HL-60	blood:	n/a
45	chr6:30949988-30950038	NB4	blood:	n/a
46	chr6:30949988-30950038	AG09309	skin:	n/a
47	chr6:30949988-30950038	HMEC	breast:	n/a
48	chr6:30949988-30950038	HUVEC	blood vessel:	n/a
49	chr6:30949988-30950038	HRCEpiC	kidney:	n/a
50	chr6:30949988-30950038	GM06990	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30915992..30918182-chr6:30949634..30951324,2	K562	blood:
2	chr6:30949349..30950069-chr6:31010283..31011164,2	MCF-7	breast:

No data

Variant related genes	Relation type
MUC21	TF binding region
MUC21	CpG island

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs2108775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249168	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2252921	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252925	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252926	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2253417	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2255625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256514	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2263299	1.00[ASN][1000 genomes]
rs2263300	1.00[ASN][1000 genomes]
rs2263301	1.00[ASN][1000 genomes]
rs2263302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263305	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2263306	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2394857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2429295	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2508016	0.85[AMR][1000 genomes]
rs2508019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517400	0.85[AMR][1000 genomes]
rs2517401	0.85[AMR][1000 genomes]
rs2517402	0.85[AMR][1000 genomes]
rs2517404	0.81[AMR][1000 genomes]
rs2517406	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2517409	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2517411	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2517412	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2517415	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2517416	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2517418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517430	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517432	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2517434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2517444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2517447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2523907	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2523908	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2523909	0.81[ASN][1000 genomes]
rs2523910	0.84[AMR][1000 genomes]
rs2523911	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2523912	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2523913	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2523915	0.85[AMR][1000 genomes]
rs2523916	0.85[AMR][1000 genomes]
rs2523918	0.85[AMR][1000 genomes]
rs2523919	0.82[AMR][1000 genomes]
rs2523920	0.85[AMR][1000 genomes]
rs2523921	0.85[AMR][1000 genomes]
rs2523923	0.82[AMR][1000 genomes]
rs2523924	0.85[AMR][1000 genomes]
rs2523925	0.85[AMR][1000 genomes]
rs2523926	0.85[AMR][1000 genomes]
rs2523927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2523930	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2530688	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2530689	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2530690	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2530691	0.85[AMR][1000 genomes]
rs2530694	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2530695	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2530697	0.85[AMR][1000 genomes]
rs2530698	0.85[AMR][1000 genomes]
rs2530699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2530706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2530716	0.85[AMR][1000 genomes]
rs2530717	0.85[AMR][1000 genomes]
rs2530718	0.83[AMR][1000 genomes]
rs2532919	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2844666	0.85[AMR][1000 genomes]
rs2844667	0.85[AMR][1000 genomes]
rs2844671	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2844673	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2844675	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2844676	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2844678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2844679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2844685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844688	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844691	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131928	0.82[ASN][1000 genomes]
rs3131929	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3131930	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs380808	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs41287842	0.93[AFR][1000 genomes]
rs436376	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6914559	0.84[AMR][1000 genomes]
rs7765796	0.85[AMR][1000 genomes]
rs7766113	0.85[AMR][1000 genomes]
rs9262315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9262435	0.81[AMR][1000 genomes]
rs9262436	0.81[AMR][1000 genomes]
rs9262445	0.85[AMR][1000 genomes]
rs9262446	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9262450	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9262451	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9262456	0.85[AMR][1000 genomes]
rs9262458	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1031677	chr6:30857542-30972865	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv462743	chr6:30905313-30957766	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv601483	chr6:30905313-30957766	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv462744	chr6:30920890-30955681	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv601484	chr6:30920890-30955681	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv3358044	chr6:30940552-31000175	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv1805090	chr6:30942284-30966453	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1023108	chr6:30944982-30990490	Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30933000-30950200	Weak transcription	Gastric	stomach
2	chr6:30949200-30950400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:30949600-30950000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:30949600-30950000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:30949600-30950000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:30949600-30950200	Active TSS	NHDF-Ad	bronchial
7	chr6:30949600-30950400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:30949600-30950400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:30949600-30950400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:30949600-30950400	Enhancers	Liver	Liver
11	chr6:30949600-30950400	Flanking Active TSS	Fetal Kidney	kidney
12	chr6:30949600-30950400	Enhancers	Fetal Muscle Leg	muscle
13	chr6:30949600-30950400	Enhancers	Placenta	Placenta
14	chr6:30949600-30950400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
15	chr6:30949600-30950400	Flanking Active TSS	HMEC	breast
16	chr6:30949600-30950600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:30949600-30950600	Flanking Active TSS	Osteobl	bone
18	chr6:30949600-30950800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:30949600-30951600	Enhancers	Stomach Mucosa	stomach
20	chr6:30949800-30950000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:30949800-30950000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr6:30949800-30950000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:30949800-30950000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:30949800-30950000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr6:30949800-30950000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:30949800-30950000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:30949800-30950000	Flanking Active TSS	Fetal Heart	heart
28	chr6:30949800-30950000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
29	chr6:30949800-30950000	Active TSS	Hela-S3	cervix
30	chr6:30949800-30950000	Flanking Active TSS	HSMMtube	muscle
31	chr6:30949800-30950200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
32	chr6:30949800-30950200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:30949800-30950200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:30949800-30950200	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr6:30949800-30950200	Flanking Active TSS	Fetal Lung	lung
36	chr6:30949800-30950200	Flanking Active TSS	NH-A	brain
37	chr6:30949800-30950200	Active TSS	NHLF	lung
38	chr6:30949800-30950400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr6:30949800-30950400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr6:30949800-30950400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:30949800-30950400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:30949800-30950400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:30949800-30950400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr6:30949800-30950400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr6:30949800-30950400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:30949800-30950400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr6:30949800-30950400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:30949800-30950400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:30949800-30950400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:30949800-30950400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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