Variant report

Variant	rs2532919
Chromosome Location	chr6:30933975-30933976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30933073..30935276-chr6:30939981..30942596,3	K562	blood:
2	chr6:30923951..30926322-chr6:30933415..30935428,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs2108775	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2248481	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2249168	0.82[AMR][1000 genomes]
rs2252921	0.80[AMR][1000 genomes]
rs2252925	0.80[AMR][1000 genomes]
rs2252926	0.80[AMR][1000 genomes]
rs2255625	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2255626	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2255719	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2263302	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2263303	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2263304	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2263305	0.80[AMR][1000 genomes]
rs2263306	0.80[AMR][1000 genomes]
rs2394857	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2508019	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2508020	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517406	0.80[AMR][1000 genomes]
rs2517409	0.80[AMR][1000 genomes]
rs2517411	0.82[AMR][1000 genomes]
rs2517415	0.82[AMR][1000 genomes]
rs2517416	0.82[AMR][1000 genomes]
rs2517418	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517419	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517420	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517421	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517422	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517424	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2517426	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2517428	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517430	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517432	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2517434	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517435	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517436	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517437	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517439	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517441	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517442	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517444	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517445	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2517446	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2517447	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2523907	0.80[AMR][1000 genomes]
rs2523927	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2523928	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2523929	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2523930	0.82[AMR][1000 genomes]
rs2530688	0.80[AMR][1000 genomes]
rs2530689	0.80[AMR][1000 genomes]
rs2530690	0.80[AMR][1000 genomes]
rs2530695	0.82[AMR][1000 genomes]
rs2530699	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2530700	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2530701	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2530702	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2530703	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2530705	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2530706	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2530708	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844671	0.80[AMR][1000 genomes]
rs2844673	0.80[AMR][1000 genomes]
rs2844675	0.82[AMR][1000 genomes]
rs2844676	0.82[AMR][1000 genomes]
rs2844678	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2844679	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844682	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844684	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844685	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844686	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844687	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844688	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844689	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2844690	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844691	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2844692	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2844693	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2844694	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3131930	0.81[EUR][1000 genomes]
rs9262315	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1031677	chr6:30857542-30972865	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv525438	chr6:30864829-30933975	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv462743	chr6:30905313-30957766	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv601483	chr6:30905313-30957766	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv462744	chr6:30920890-30955681	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv601484	chr6:30920890-30955681	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30932000-30934000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:30932200-30949800	Weak transcription	Right Atrium	heart
3	chr6:30933000-30939800	Weak transcription	Esophagus	oesophagus
4	chr6:30933000-30950200	Weak transcription	Gastric	stomach
5	chr6:30933800-30934000	Enhancers	Lung	lung
6	chr6:30933800-30934000	Enhancers	Spleen	Spleen
7	chr6:30933800-30934000	Bivalent Enhancer	GM12878-XiMat	blood

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