Variant report

Variant	rs2272150
Chromosome Location	chr3:142383318-142383319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142314277..142316663-chr3:142382049..142384101,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120756	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11709121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11714087	0.85[EUR][1000 genomes]
rs11719960	1.00[AFR][1000 genomes]
rs1403726	0.89[EUR][1000 genomes]
rs2049329	0.84[EUR][1000 genomes]
rs2140435	0.87[EUR][1000 genomes]
rs2140436	0.89[EUR][1000 genomes]
rs55951550	0.87[EUR][1000 genomes]
rs56328361	0.86[EUR][1000 genomes]
rs6440100	0.86[EUR][1000 genomes]
rs73228752	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73228759	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73230564	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142369400-142408400	Weak transcription	Pancreas	Pancrea
3	chr3:142371000-142393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:142372600-142391200	Weak transcription	K562	blood
5	chr3:142376600-142388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:142379200-142413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:142380000-142390000	Weak transcription	Dnd41	blood
8	chr3:142380000-142390400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:142380000-142391800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:142380200-142383600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:142380200-142388800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:142380200-142391000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:142381800-142385800	Enhancers	Fetal Intestine Small	intestine
14	chr3:142382000-142385200	Enhancers	Fetal Intestine Large	intestine
15	chr3:142382200-142385200	Enhancers	Stomach Mucosa	stomach
16	chr3:142382400-142383600	Active TSS	Duodenum Mucosa	Duodenum
17	chr3:142382600-142384400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:142382600-142400400	Weak transcription	Gastric	stomach
19	chr3:142382800-142384400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr3:142383000-142383400	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr3:142383000-142384000	Flanking Active TSS	HepG2	liver
22	chr3:142383000-142384400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:142383200-142383400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr3:142383200-142383600	Active TSS	A549	lung
25	chr3:142383200-142383800	Active TSS	Liver	Liver
26	chr3:142383200-142384000	Enhancers	Fetal Kidney	kidney
27	chr3:142383200-142384400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:142383200-142384400	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr3:142383200-142388800	Weak transcription	Rectal Mucosa Donor 29	rectum

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