Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11709121	0.83[EUR][1000 genomes]
rs11711434	0.81[EUR][1000 genomes]
rs11714087	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1403726	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17623058	0.81[EUR][1000 genomes]
rs2049329	0.90[EUR][1000 genomes]
rs2140435	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140436	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2272150	0.86[EUR][1000 genomes]
rs55655603	0.86[AFR][1000 genomes]
rs55951550	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56161530	0.81[EUR][1000 genomes]
rs56246347	0.86[AFR][1000 genomes]
rs56397702	1.00[AFR][1000 genomes]
rs6440100	0.95[EUR][1000 genomes]
rs73228762	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73228782	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73228788	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73230564	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73230583	0.86[AFR][1000 genomes]
rs73230587	0.86[AFR][1000 genomes]
rs73230588	0.86[AFR][1000 genomes]
rs9683274	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142343400-142366400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:142348800-142364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:142355400-142363600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:142355400-142364000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:142357000-142358000	Weak transcription	Fetal Brain Male	brain
6	chr3:142357000-142371400	Weak transcription	Aorta	Aorta
7	chr3:142357600-142365200	Weak transcription	Colonic Mucosa	Colon

Quick Search: