Variant report

Variant	rs1403726
Chromosome Location	chr3:142360913-142360914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11709121	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11711434	0.83[EUR][1000 genomes]
rs11714087	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17623058	0.83[EUR][1000 genomes]
rs2049329	0.92[EUR][1000 genomes]
rs2140435	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2140436	0.86[CHB][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2272150	0.89[EUR][1000 genomes]
rs55951550	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56161530	0.83[EUR][1000 genomes]
rs56328361	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6440100	0.97[EUR][1000 genomes]
rs73228762	0.81[EUR][1000 genomes]
rs73228782	0.83[EUR][1000 genomes]
rs73228788	0.84[EUR][1000 genomes]
rs73230564	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9683274	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv3408045	chr3:142359112-142361260	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142343400-142366400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:142348800-142364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:142355400-142363600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:142355400-142364000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:142357000-142371400	Weak transcription	Aorta	Aorta
6	chr3:142357600-142365200	Weak transcription	Colonic Mucosa	Colon
7	chr3:142358600-142361600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:142358600-142365600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:142360600-142361600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:142360800-142371400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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