Variant report

Variant	rs2140435
Chromosome Location	chr3:142374360-142374361
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11709121	0.88[EUR][1000 genomes]
rs11711434	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11714087	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1403726	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17623058	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2049329	0.95[EUR][1000 genomes]
rs2140436	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2272150	0.87[EUR][1000 genomes]
rs55951550	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56161530	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56328361	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440100	0.99[EUR][1000 genomes]
rs73228782	0.81[EUR][1000 genomes]
rs73228788	0.82[EUR][1000 genomes]
rs73230564	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9683274	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142367800-142375400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:142367800-142375400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr3:142369200-142379200	Weak transcription	Dnd41	blood
5	chr3:142369400-142408400	Weak transcription	Pancreas	Pancrea
6	chr3:142369600-142375800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:142371000-142393800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:142372000-142375800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:142372000-142382000	Weak transcription	HepG2	liver
10	chr3:142372000-142382800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:142372200-142375400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:142372200-142375800	Weak transcription	Liver	Liver
13	chr3:142372200-142379200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:142372400-142375400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:142372600-142381800	Weak transcription	Fetal Intestine Small	intestine
16	chr3:142372600-142391200	Weak transcription	K562	blood
17	chr3:142372800-142375800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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