Variant report

Variant	rs2275160
Chromosome Location	chr9:139621168-139621169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:185)
CpG islands
(count:0)
Chromatin interactive
region (count:60)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:185 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr9:139620013-139621566	K562	blood:	n/a	n/a
2	CTCF	chr9:139621083-139621203	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr9:139621061-139621599	K562	blood:	n/a	n/a
4	POLR2A	chr9:139621112-139621604	Raji	blood:	n/a	n/a
5	POLR2A	chr9:139620411-139621384	HepG2	liver:	n/a	n/a
6	POLR2A	chr9:139619685-139623692	GM12892	blood:	n/a	n/a
7	POLR2A	chr9:139620239-139621521	GM12878	blood:	n/a	n/a
8	CHD2	chr9:139621015-139621473	K562	blood:	n/a	n/a
9	ATF2	chr9:139621008-139621335	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr9:139620563-139621606	GM12892	blood:	n/a	n/a
11	POLR2A	chr9:139613661-139625070	K562	blood:	n/a	n/a
12	CTCF	chr9:139621060-139621350	HEK293	kidney:	n/a	n/a
13	POLR2A	chr9:139620970-139621575	ECC-1	luminal epithelium:	n/a	n/a
14	CTCF	chr9:139620963-139621526	HepG2	liver:	n/a	n/a
15	CTCF	chr9:139620859-139621655	HCT-116	colon:	n/a	n/a
16	MAX	chr9:139620890-139621713	K562	blood:	n/a	n/a
17	BCL3	chr9:139620898-139622243	A549	lung:	n/a	n/a
18	CTCF	chr9:139621140-139621290	HAc	cerebellar:	n/a	n/a
19	POLR2A	chr9:139620971-139621566	HCT-116	colon:	n/a	n/a
20	STAT1	chr9:139621035-139621275	GM12878	blood:	n/a	n/a
21	POLR2A	chr9:139619977-139621550	MCF-7	breast:	n/a	n/a
22	CTCF	chr9:139621040-139621190	HCM	heart:	n/a	n/a
23	CTCF	chr9:139621104-139621453	GM10248	blood:	n/a	n/a
24	ZKSCAN1	chr9:139621141-139621402	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr9:139620745-139621694	U87	brain:	n/a	n/a
26	SIN3AK20	chr9:139619836-139623651	MCF-7	breast:	n/a	n/a
27	POLR2A	chr9:139619804-139621671	GM12891	blood:	n/a	n/a
28	POLR2A	chr9:139619811-139621623	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr9:139615152-139624044	PFSK-1	brain:	n/a	n/a
30	CTCF	chr9:139620193-139621526	SK-N-SH	brain:	n/a	n/a
31	SIN3AK20	chr9:139620996-139621490	A549	lung:	n/a	n/a
32	CTCF	chr9:139621140-139621290	NHEK	skin:	n/a	n/a
33	POLR2A	chr9:139614438-139623107	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr9:139621029-139623177	GM12878	blood:	n/a	n/a
35	ELK1	chr9:139620702-139621442	K562	blood:	n/a	n/a
36	TEAD4	chr9:139620953-139621529	K562	blood:	n/a	n/a
37	MYC	chr9:139621154-139621607	K562	blood:	n/a	n/a
38	BCLAF1	chr9:139621065-139621474	GM12878	blood:	n/a	n/a
39	POLR2A	chr9:139615050-139622967	PFSK-1	brain:	n/a	n/a
40	CTCF	chr9:139621071-139621455	T-47D	breast:	n/a	n/a
41	CTCF	chr9:139621163-139621460	MCF-7	breast:	n/a	n/a
42	CTCF	chr9:139621160-139621310	HCT-116	colon:	n/a	n/a
43	ZNF143	chr9:139621139-139621506	GM12878	blood:	n/a	n/a
44	SIN3A	chr9:139621139-139621474	H1-hESC	embryonic stem cell:	n/a	n/a
45	BCL3	chr9:139620537-139621464	A549	lung:	n/a	n/a
46	CTCF	chr9:139620953-139621532	K562	blood:	n/a	n/a
47	POLR2A	chr9:139619861-139623901	K562	blood:	n/a	n/a
48	CTCF	chr9:139621160-139621310	Hela-S3	cervix:	n/a	n/a
49	RCOR1	chr9:139621101-139621482	K562	blood:	n/a	n/a
50	POLR2A	chr9:139619904-139621539	HepG2	liver:	n/a	n/a

No data

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:139570497..139595051-chr9:139610806..139626266,85	MCF-7	breast:
2	chr9:139564974..139568395-chr9:139620785..139624804,6	MCF-7	breast:
3	chr9:139618479..139621443-chr9:139890768..139893620,2	K562	blood:
4	chr9:139621081..139623716-chr9:139698573..139702303,4	K562	blood:
5	chr9:139621097..139622656-chr9:140082279..140085115,2	K562	blood:
6	chr9:139331653..139334460-chr9:139620193..139622356,2	MCF-7	breast:
7	chr9:139621145..139622872-chr9:139718772..139721878,3	K562	blood:
8	chr9:139559252..139566873-chr9:139615343..139623790,23	MCF-7	breast:
9	chr9:139619516..139623685-chr9:139693810..139697808,6	K562	blood:
10	chr9:139620315..139626197-chr9:139646581..139660029,24	MCF-7	breast:
11	chr9:139620423..139623520-chr9:139779258..139782010,3	K562	blood:
12	chr9:139616966..139626046-chr9:139651480..139662091,27	MCF-7	breast:
13	chr9:139376700..139379516-chr9:139619052..139623345,7	K562	blood:
14	chr9:139619516..139624583-chr9:139694122..139697808,6	K562	blood:
15	chr9:139621166..139623955-chr9:139702630..139705456,7	K562	blood:
16	chr9:139621075..139623829-chr9:139838145..139840956,4	K562	blood:
17	chr9:139620963..139623863-chr9:139946422..139948967,2	K562	blood:
18	chr7:84568918..84570842-chr9:139619990..139622918,5	MCF-7	breast:
19	chr9:139586216..139592582-chr9:139618001..139626030,23	MCF-7	breast:
20	chr9:139621166..139623785-chr9:139780041..139782196,3	K562	blood:
21	chr9:139440519..139442759-chr9:139620071..139622669,2	MCF-7	breast:
22	chr1:149820028..149821880-chr9:139618482..139621228,2	MCF-7	breast:
23	chr9:139621146..139622893-chr9:139980116..139982904,2	K562	blood:
24	chr9:139376144..139379676-chr9:139621146..139625438,7	K562	blood:
25	chr9:139619929..139623671-chr9:139747589..139752463,5	K562	blood:
26	chr9:139618685..139627120-chr9:139649384..139659403,28	K562	blood:
27	chr9:139550367..139553990-chr9:139620470..139623821,3	MCF-7	breast:
28	chr9:139496776..139498565-chr9:139620965..139623947,2	K562	blood:
29	chr9:139621035..139624561-chr9:139681529..139687287,9	K562	blood:
30	chr9:139620788..139624093-chr9:139694172..139695988,3	MCF-7	breast:
31	chr9:139619134..139621860-chr9:140316424..140318668,2	MCF-7	breast:
32	chr9:139620118..139623932-chr9:139922375..139925511,3	MCF-7	breast:
33	chr9:139620633..139624484-chr9:139701088..139704302,3	MCF-7	breast:
34	chr9:139620467..139623691-chr9:139756256..139761738,5	K562	blood:
35	chr9:139619899..139624270-chr9:139920948..139923440,3	MCF-7	breast:
36	chr9:139620752..139623162-chr9:139701207..139703819,3	MCF-7	breast:
37	chr9:139610819..139629219-chr9:139630372..139645615,53	MCF-7	breast:
38	chr9:139440721..139444129-chr9:139620823..139623171,3	K562	blood:
39	chr9:139255640..139259795-chr9:139620500..139624170,6	K562	blood:
40	chr9:139257144..139260573-chr9:139620692..139623633,4	K562	blood:
41	chr7:84567429..84570853-chr9:139619029..139623910,14	K562	blood:
42	chr9:139619294..139624280-chr9:139740511..139747015,10	K562	blood:
43	chr8:103666334..103668063-chr9:139620100..139622270,2	MCF-7	breast:
44	chr7:84567405..84570854-chr9:139616789..139624022,24	K562	blood:
45	chr7:84569318..84570852-chr9:139620676..139624384,6	MCF-7	breast:
46	chr9:139617845..139623838-chr9:139660350..139667246,10	K562	blood:
47	chr9:139620499..139624602-chr9:139683512..139688148,14	K562	blood:
48	chr9:139620780..139622639-chr9:139796152..139798195,2	MCF-7	breast:
49	chr9:139377085..139379352-chr9:139619348..139623293,4	MCF-7	breast:
50	chr9:139619617..139624144-chr9:139707451..139711531,5	K562	blood:

No data

Variant related genes	Relation type
SNHG7	TF binding region
ENSG00000169692	Chromatin interaction
ENSG00000187609	Chromatin interaction
ENSG00000204001	Chromatin interaction
ENSG00000221693	Chromatin interaction
ENSG00000261716	Chromatin interaction
ENSG00000177984	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000196366	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000213221	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000187922	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000188747	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000204003	Chromatin interaction
ENSG00000176101	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000172889	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000148400	Chromatin interaction
ENSG00000199161	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000265181	Chromatin interaction
ENSG00000237886	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000267206	Chromatin interaction
ENSG00000148384	Chromatin interaction
ENSG00000213212	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000232019	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000107223	Chromatin interaction
ENSG00000252440	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10114790	0.84[ASN][1000 genomes]
rs10116492	0.86[JPT][hapmap]
rs10118376	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10118736	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs10781512	0.89[JPT][hapmap]
rs10870112	0.86[JPT][hapmap]
rs10870117	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs1108607	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11145843	0.89[ASN][1000 genomes]
rs11145868	0.82[CHB][hapmap]
rs11998802	0.86[JPT][hapmap]
rs12342911	0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs12554709	0.83[ASN][1000 genomes]
rs2385891	0.86[JPT][hapmap]
rs2484659	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2784068	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2811728	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2811735	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs3884591	0.86[JPT][hapmap]
rs4419903	0.93[JPT][hapmap]
rs4585841	0.80[ASN][1000 genomes]
rs4880130	0.86[JPT][hapmap]
rs4880133	0.94[ASN][1000 genomes]
rs4880135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4880136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58529385	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6560646	0.81[ASN][1000 genomes]
rs67957838	0.91[ASN][1000 genomes]
rs7022413	0.86[JPT][hapmap]
rs7848644	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7855405	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859350	0.94[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7859621	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7862031	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs879467	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9411219	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9411221	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9411269	0.94[ASN][1000 genomes]
rs945379	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9886752	0.94[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	nsv894326	chr9:139057463-139647074	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	260 gene(s)	inside rSNPs	diseases
4	nsv894337	chr9:139069713-139669111	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
5	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
6	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
7	nsv894351	chr9:139124856-139679387	Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
8	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
9	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
10	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
11	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
12	esv1836722	chr9:139301583-139669111	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
14	esv1807611	chr9:139344200-139633839	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
15	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
16	esv1803718	chr9:139368953-139643023	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
17	esv1851291	chr9:139371234-139669111	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	200 gene(s)	inside rSNPs	diseases
18	nsv894384	chr9:139376426-139622024	Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
19	nsv894385	chr9:139376426-139647074	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
20	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
21	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
22	esv1820573	chr9:139377938-139643023	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
23	esv1839109	chr9:139377938-139660589	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
24	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
25	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
26	esv1803407	chr9:139393591-139643023	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
27	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
28	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
29	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
30	nsv8579	chr9:139399884-139654708	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
31	nsv894392	chr9:139403102-139669111	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
32	nsv894402	chr9:139457506-139634495	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
33	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
34	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
35	nsv894420	chr9:139487092-139634495	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
36	esv1846227	chr9:139487092-139643023	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
37	esv1794085	chr9:139487092-139649379	Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
38	esv1837438	chr9:139487092-139660589	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
39	nsv894421	chr9:139487092-139669111	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
40	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
41	nsv894428	chr9:139496028-139647074	ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
42	nsv894431	chr9:139522101-139642961	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
43	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
44	nsv894438	chr9:139544437-139622024	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
45	nsv894439	chr9:139544437-139634495	Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
46	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
47	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
48	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
49	nsv540348	chr9:139550414-139687876	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
50	nsv894444	chr9:139553723-139627726	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2275160	LCN8	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139614600-139621600	Genic enhancers	Spleen	Spleen
2	chr9:139614800-139621400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:139618200-139621600	Transcr. at gene 5' and 3'	Hela-S3	cervix
4	chr9:139618800-139621600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:139619200-139621200	Genic enhancers	Fetal Muscle Trunk	muscle
6	chr9:139619200-139621400	Genic enhancers	Placenta	Placenta
7	chr9:139619400-139621600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:139619400-139621600	Genic enhancers	Placenta Amnion	Placenta Amnion
9	chr9:139619400-139622000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:139619800-139622000	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
11	chr9:139620000-139621200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:139620000-139621200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr9:139620000-139621200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:139620000-139621200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr9:139620000-139621200	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:139620000-139621200	Genic enhancers	Fetal Brain Male	brain
17	chr9:139620000-139621200	Transcr. at gene 5' and 3'	Right Ventricle	heart
18	chr9:139620000-139621400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:139620000-139621400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
20	chr9:139620000-139621600	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
21	chr9:139620000-139621600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:139620000-139621600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:139620000-139621600	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:139620000-139621600	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
25	chr9:139620000-139621600	Transcr. at gene 5' and 3'	HSMM	muscle
26	chr9:139620000-139622000	Transcr. at gene 5' and 3'	K562	blood
27	chr9:139620000-139622200	Transcr. at gene 5' and 3'	A549	lung
28	chr9:139620000-139623000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:139620200-139621200	Transcr. at gene 5' and 3'	NH-A	brain
30	chr9:139620200-139621400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:139620200-139621400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:139620200-139621400	Enhancers	Fetal Heart	heart
33	chr9:139620200-139621600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:139620200-139621600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:139620200-139621600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
36	chr9:139620200-139621600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
37	chr9:139620200-139621600	Transcr. at gene 5' and 3'	Adipose Nuclei	Adipose
38	chr9:139620200-139621600	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
39	chr9:139620200-139621600	Transcr. at gene 5' and 3'	HepG2	liver
40	chr9:139620200-139621600	Transcr. at gene 5' and 3'	Osteobl	bone
41	chr9:139620200-139621800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
42	chr9:139620200-139622000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
43	chr9:139620400-139621200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr9:139620400-139621200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
45	chr9:139620400-139621200	Genic enhancers	Primary monocytes fromperipheralblood	blood
46	chr9:139620400-139621200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:139620400-139621200	Genic enhancers	Brain Substantia Nigra	brain
48	chr9:139620400-139621400	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:139620400-139621400	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr9:139620400-139621400	Genic enhancers	Primary neutrophils fromperipheralblood	blood

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