Variant report

Variant	rs7859621
Chromosome Location	chr9:139623977-139623978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:139613661-139625070	K562	blood:	n/a	n/a
2	POLR2A	chr9:139623351-139624060	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:139615152-139624044	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr9:139623062-139624119	HCT-116	colon:	n/a	n/a
5	POLR2A	chr9:139619189-139625931	HepG2	liver:	n/a	n/a
6	POLR2A	chr9:139614441-139624589	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr9:139620876-139624117	MCF10A-Er-Src	breast:	n/a	n/a
8	FOSL2	chr9:139623452-139624120	A549	lung:	n/a	n/a
9	MAX	chr9:139620254-139624067	A549	lung:	n/a	chr9:139622751-139622760 chr9:139622753-139622762 chr9:139622752-139622759 chr9:139622751-139622761
10	POLR2A	chr9:139611785-139624497	K562	blood:	n/a	n/a
11	JUN	chr9:139622364-139623991	K562	blood:	n/a	chr9:139622776-139622785
12	SRF	chr9:139622293-139624009	HCT-116	colon:	n/a	chr9:139622653-139622671
13	POLR2A	chr9:139614461-139623997	HUVEC	blood vessel:	n/a	n/a
14	POLR2A	chr9:139621872-139624009	HCT-116	colon:	n/a	n/a
15	REST	chr9:139623437-139624277	A549	lung:	n/a	chr9:139623808-139623817 chr9:139623940-139623960 chr9:139624117-139624137 chr9:139624117-139624137 chr9:139623516-139623526
16	POLR2A	chr9:139620749-139624121	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr9:139622999-139624195	PFSK-1	brain:	n/a	n/a
18	POLR2A	chr9:139622997-139624274	K562	blood:	n/a	n/a
19	WRNIP1	chr9:139623954-139624011	GM12878	blood:	n/a	n/a
20	IRF1	chr9:139623735-139624025	K562	blood:	n/a	n/a
21	MAX	chr9:139621831-139624013	HepG2	liver:	n/a	chr9:139622751-139622760 chr9:139622753-139622762 chr9:139622752-139622759 chr9:139622751-139622761
22	POLR2A	chr9:139621836-139624002	Raji	blood:	n/a	n/a
23	TCF12	chr9:139619851-139624146	A549	lung:	n/a	chr9:139624136-139624143 chr9:139624135-139624145
24	POLR2A	chr9:139623354-139623998	HepG2	liver:	n/a	n/a
25	POLR2A	chr9:139621702-139623997	A549	lung:	n/a	n/a
26	POLR2A	chr9:139619785-139624577	HL-60	blood:	n/a	n/a
27	BCL3	chr9:139623082-139624252	A549	lung:	n/a	chr9:139623377-139623390

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:139570497..139595051-chr9:139610806..139626266,85	MCF-7	breast:
2	chr9:139564974..139568395-chr9:139620785..139624804,6	MCF-7	breast:
3	chr9:139620315..139626197-chr9:139646581..139660029,24	MCF-7	breast:
4	chr9:139616966..139626046-chr9:139651480..139662091,27	MCF-7	breast:
5	chr9:139621206..139624482-chr9:139640401..139643595,4	MCF-7	breast:
6	chr9:139619516..139624583-chr9:139694122..139697808,6	K562	blood:
7	chr9:139586216..139592582-chr9:139618001..139626030,23	MCF-7	breast:
8	chr9:139622733..139626444-chr9:139667758..139670003,3	K562	blood:
9	chr9:139376314..139380925-chr9:139621169..139625507,6	MCF-7	breast:
10	chr9:139621264..139624234-chr9:139940317..139942118,2	K562	blood:
11	chr9:139376144..139379676-chr9:139621146..139625438,7	K562	blood:
12	chr9:139306917..139309848-chr9:139622681..139624301,2	K562	blood:
13	chr9:139618685..139627120-chr9:139649384..139659403,28	K562	blood:
14	chr9:139621035..139624561-chr9:139681529..139687287,9	K562	blood:
15	chr9:139621304..139624184-chr9:139872879..139875710,3	K562	blood:
16	chr9:139620788..139624093-chr9:139694172..139695988,3	MCF-7	breast:
17	chr9:139622715..139625177-chr9:140135905..140137548,2	MCF-7	breast:
18	chr9:139620633..139624484-chr9:139701088..139704302,3	MCF-7	breast:
19	chr9:139619899..139624270-chr9:139920948..139923440,3	MCF-7	breast:
20	chr9:139622227..139624694-chr9:139741896..139744177,2	MCF-7	breast:
21	chr9:139610819..139629219-chr9:139630372..139645615,53	MCF-7	breast:
22	chr9:139621278..139624827-chr9:139660350..139665047,5	K562	blood:
23	chr9:139255640..139259795-chr9:139620500..139624170,6	K562	blood:
24	chr9:139619294..139624280-chr9:139740511..139747015,10	K562	blood:
25	chr7:84567405..84570854-chr9:139616789..139624022,24	K562	blood:
26	chr7:84569318..84570852-chr9:139620676..139624384,6	MCF-7	breast:
27	chr9:139620499..139624602-chr9:139683512..139688148,14	K562	blood:
28	chr9:139619617..139624144-chr9:139707451..139711531,5	K562	blood:
29	chr9:139620371..139624237-chr9:139739421..139743672,6	K562	blood:
30	chr9:139620737..139624257-chr9:139888286..139891164,3	K562	blood:
31	chr9:139622060..139624419-chr9:139980313..139982424,2	K562	blood:

No data

Variant related genes	Relation type
SNHG7	TF binding region
ENSG00000107317	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000221693	Chromatin interaction
ENSG00000213212	Chromatin interaction
ENSG00000177984	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000213221	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000196366	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000267206	Chromatin interaction
ENSG00000187922	Chromatin interaction
ENSG00000204003	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000199161	Chromatin interaction
ENSG00000204001	Chromatin interaction
ENSG00000169692	Chromatin interaction
ENSG00000232019	Chromatin interaction
ENSG00000054148	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10114790	0.96[ASN][1000 genomes]
rs10118376	0.93[ASN][1000 genomes]
rs10118736	0.88[ASN][1000 genomes]
rs10870117	0.87[ASN][1000 genomes]
rs1108607	0.83[ASN][1000 genomes]
rs11145852	0.85[ASN][1000 genomes]
rs11145853	0.91[ASN][1000 genomes]
rs11145854	0.87[ASN][1000 genomes]
rs11145857	0.87[ASN][1000 genomes]
rs11145862	0.86[ASN][1000 genomes]
rs11145867	0.80[ASN][1000 genomes]
rs12342911	0.92[ASN][1000 genomes]
rs12345308	0.88[ASN][1000 genomes]
rs12350740	0.88[ASN][1000 genomes]
rs12684980	0.88[ASN][1000 genomes]
rs2275160	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2484659	0.84[ASN][1000 genomes]
rs2484660	0.84[ASN][1000 genomes]
rs2784067	0.82[ASN][1000 genomes]
rs2784068	0.82[ASN][1000 genomes]
rs2784071	0.89[ASN][1000 genomes]
rs2811727	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2811728	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2811730	0.84[ASN][1000 genomes]
rs2811732	0.83[ASN][1000 genomes]
rs2811735	0.82[ASN][1000 genomes]
rs28678356	0.88[ASN][1000 genomes]
rs35852083	0.90[ASN][1000 genomes]
rs4419903	0.80[ASN][1000 genomes]
rs4585841	0.92[ASN][1000 genomes]
rs4880133	0.81[ASN][1000 genomes]
rs4880135	0.81[ASN][1000 genomes]
rs4880136	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58529385	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62582222	0.88[ASN][1000 genomes]
rs6560646	0.93[ASN][1000 genomes]
rs67957838	0.80[ASN][1000 genomes]
rs7848644	0.85[ASN][1000 genomes]
rs7848807	0.88[ASN][1000 genomes]
rs7855405	0.87[ASN][1000 genomes]
rs7859350	0.92[ASN][1000 genomes]
rs7862031	0.88[ASN][1000 genomes]
rs879467	0.83[ASN][1000 genomes]
rs9411219	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9411221	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9411224	0.88[ASN][1000 genomes]
rs9411225	0.90[ASN][1000 genomes]
rs9411269	0.81[ASN][1000 genomes]
rs9411272	0.82[ASN][1000 genomes]
rs945379	0.89[ASN][1000 genomes]
rs9886752	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	nsv894326	chr9:139057463-139647074	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	260 gene(s)	inside rSNPs	diseases
4	nsv894337	chr9:139069713-139669111	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
5	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
6	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
7	nsv894351	chr9:139124856-139679387	Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
8	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
9	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
10	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
11	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
12	esv1836722	chr9:139301583-139669111	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
14	esv1807611	chr9:139344200-139633839	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
15	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
16	esv1803718	chr9:139368953-139643023	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
17	esv1851291	chr9:139371234-139669111	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	200 gene(s)	inside rSNPs	diseases
18	nsv894385	chr9:139376426-139647074	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
19	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
20	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
21	esv1820573	chr9:139377938-139643023	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
22	esv1839109	chr9:139377938-139660589	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
23	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
24	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
25	esv1803407	chr9:139393591-139643023	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
26	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
27	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
28	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
29	nsv8579	chr9:139399884-139654708	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
30	nsv894392	chr9:139403102-139669111	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
31	nsv894402	chr9:139457506-139634495	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
32	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
33	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
34	nsv894420	chr9:139487092-139634495	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
35	esv1846227	chr9:139487092-139643023	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
36	esv1794085	chr9:139487092-139649379	Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
37	esv1837438	chr9:139487092-139660589	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
38	nsv894421	chr9:139487092-139669111	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
39	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
40	nsv894428	chr9:139496028-139647074	ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
41	nsv894431	chr9:139522101-139642961	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
42	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
43	nsv894439	chr9:139544437-139634495	Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
44	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
45	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
46	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
47	nsv540348	chr9:139550414-139687876	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
48	nsv894444	chr9:139553723-139627726	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
49	nsv894445	chr9:139556771-139669111	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
50	nsv1043160	chr9:139560991-139665208	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7859621	LCN8	cis	Muscle Skeletal	GTEx

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139621600-139624200	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr9:139622800-139624000	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr9:139622800-139624000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr9:139622800-139624000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:139622800-139624000	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr9:139622800-139624000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr9:139622800-139624000	Flanking Active TSS	HMEC	breast
8	chr9:139622800-139624200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr9:139623000-139624000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr9:139623000-139624200	Enhancers	Fetal Heart	heart
11	chr9:139623000-139624400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:139623000-139624400	Flanking Active TSS	GM12878-XiMat	blood
13	chr9:139623000-139624600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:139623200-139624000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:139623200-139624000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:139623200-139624000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:139623200-139624600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:139623400-139624000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr9:139623400-139624000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr9:139623400-139624000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr9:139623400-139624000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:139623400-139624000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:139623400-139624000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:139623400-139624000	Flanking Active TSS	Fetal Muscle Trunk	muscle
25	chr9:139623400-139624000	Enhancers	Spleen	Spleen
26	chr9:139623400-139624000	Flanking Active TSS	HepG2	liver
27	chr9:139623400-139624000	Flanking Active TSS	Osteobl	bone
28	chr9:139623400-139624200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:139623400-139624200	Flanking Active TSS	Hela-S3	cervix
30	chr9:139623400-139624200	Flanking Active TSS	NHEK	skin
31	chr9:139623400-139624600	Flanking Active TSS	K562	blood
32	chr9:139623600-139624000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:139623600-139624000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:139623600-139624000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:139623600-139624000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr9:139623600-139624000	Enhancers	Primary T cells fromperipheralblood	blood
37	chr9:139623600-139624000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr9:139623600-139624000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr9:139623600-139624000	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr9:139623600-139624000	Enhancers	Liver	Liver
41	chr9:139623600-139624000	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr9:139623600-139624000	Enhancers	Esophagus	oesophagus
43	chr9:139623600-139624000	Enhancers	Fetal Intestine Large	intestine
44	chr9:139623600-139624000	Enhancers	Fetal Lung	lung
45	chr9:139623600-139624000	Enhancers	Gastric	stomach
46	chr9:139623600-139624000	Enhancers	Lung	lung
47	chr9:139623600-139624000	Enhancers	Placenta Amnion	Placenta Amnion
48	chr9:139623600-139624000	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr9:139623600-139624000	Flanking Active TSS	HSMM	muscle
50	chr9:139623600-139624000	Flanking Active TSS	NH-A	brain

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