Variant report

Variant	rs9411221
Chromosome Location	chr9:139622646-139622647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:139622640-139622790	SAEC	small airway:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
2	CTCF	chr9:139622620-139622770	HPAF	blood vessel:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
3	TAF1	chr9:139622487-139622805	A549	lung:	n/a	n/a
4	MAX	chr9:139621953-139622994	Hela-S3	cervix:	n/a	chr9:139622751-139622760 chr9:139622753-139622762 chr9:139622752-139622759 chr9:139622751-139622761
5	USF1	chr9:139622541-139622944	SK-N-SH	brain:	n/a	n/a
6	CTCF	chr9:139622620-139622770	HepG2	liver:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
7	CTCF	chr9:139622600-139622750	HPF	lung:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622711-139622724
8	POLR2A	chr9:139621708-139623134	GM12892	blood:	n/a	n/a
9	TAF1	chr9:139622407-139622941	H1-hESC	embryonic stem cell:	n/a	n/a
10	RELA	chr9:139622411-139622932	GM18951	blood:	n/a	n/a
11	BACH1	chr9:139622457-139623032	K562	blood:	n/a	n/a
12	TAF1	chr9:139622427-139622868	H1-neurons	neurons:	n/a	n/a
13	SP4	chr9:139622443-139622829	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr9:139621835-139622994	K562	blood:	n/a	n/a
15	FOXP2	chr9:139622481-139622830	SK-N-MC	brain:	n/a	n/a
16	HNF4A	chr9:139622519-139622787	HepG2	liver:	n/a	n/a
17	CTCF	chr9:139622580-139622730	RPTEC	kidney:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622711-139622724
18	POLR2A	chr9:139621996-139623066	HEK293	kidney:	n/a	n/a
19	SIN3AK20	chr9:139622414-139622860	A549	lung:	n/a	n/a
20	CEBPD	chr9:139622456-139622805	HepG2	liver:	n/a	n/a
21	MAZ	chr9:139622396-139623181	GM12878	blood:	n/a	chr9:139622751-139622760 chr9:139622753-139622762 chr9:139622752-139622759 chr9:139622751-139622761
22	POLR2A	chr9:139619685-139623692	GM12892	blood:	n/a	n/a
23	CTCF	chr9:139622620-139622770	GM12872	blood:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
24	YY1	chr9:139622318-139623282	HepG2	liver:	n/a	chr9:139622810-139622821
25	MXI1	chr9:139622410-139622958	HepG2	liver:	n/a	n/a
26	POLR2A	chr9:139622190-139622996	HepG2	liver:	n/a	n/a
27	JUN	chr9:139622604-139622735	H1-hESC	embryonic stem cell:	n/a	n/a
28	MXI1	chr9:139621836-139622927	K562	blood:	n/a	chr9:139622177-139622186
29	USF2	chr9:139622546-139622869	H1-hESC	embryonic stem cell:	n/a	n/a
30	ZBTB33	chr9:139622382-139622925	A549	lung:	n/a	n/a
31	REST	chr9:139621848-139623122	H1-neurons	neurons:	n/a	chr9:139622051-139622061 chr9:139622798-139622811 chr9:139622737-139622747
32	MYC	chr9:139621946-139623591	K562	blood:	n/a	chr9:139622751-139622760 chr9:139622753-139622762 chr9:139622752-139622759 chr9:139622751-139622761
33	POLR2A	chr9:139622388-139622880	GM12878	blood:	n/a	n/a
34	EP300	chr9:139622468-139622871	H1-hESC	embryonic stem cell:	n/a	chr9:139622749-139622765 chr9:139622737-139622753 chr9:139622744-139622753
35	NFATC1	chr9:139622422-139622873	GM12878	blood:	n/a	n/a
36	GATA3	chr9:139622412-139622894	T-47D	breast:	n/a	n/a
37	POLR2A	chr9:139621663-139622975	HUVEC	blood vessel:	n/a	n/a
38	ESRRA	chr9:139621669-139623501	GM12878	blood:	n/a	chr9:139623204-139623217
39	CTCFL	chr9:139622520-139622818	K562	blood:	n/a	n/a
40	RXRA	chr9:139622580-139622784	GM12878	blood:	n/a	n/a
41	CTCF	chr9:139622524-139622871	GM13976	blood:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
42	CTCF	chr9:139622620-139622770	GM12873	blood:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
43	POLR2A	chr9:139613661-139625070	K562	blood:	n/a	n/a
44	CTCF	chr9:139622640-139622790	Hela-S3	cervix:	n/a	chr9:139622710-139622726 chr9:139622709-139622727 chr9:139622746-139622759 chr9:139622711-139622724
45	BCLAF1	chr9:139622286-139623017	K562	blood:	n/a	n/a
46	RXRA	chr9:139622560-139622983	GM12878	blood:	n/a	n/a
47	RELA	chr9:139622064-139622871	GM19099	blood:	n/a	n/a
48	NFIC	chr9:139622446-139622850	HepG2	liver:	n/a	n/a
49	PAX5	chr9:139622287-139623414	GM12892	blood:	n/a	n/a
50	KAT2A	chr9:139622542-139622742	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:139570497..139595051-chr9:139610806..139626266,85	MCF-7	breast:
2	chr9:139564974..139568395-chr9:139620785..139624804,6	MCF-7	breast:
3	chr9:139621081..139623716-chr9:139698573..139702303,4	K562	blood:
4	chr9:139621097..139622656-chr9:140082279..140085115,2	K562	blood:
5	chr9:139621216..139622875-chr9:139685230..139687360,2	MCF-7	breast:
6	chr9:139621145..139622872-chr9:139718772..139721878,3	K562	blood:
7	chr9:139559252..139566873-chr9:139615343..139623790,23	MCF-7	breast:
8	chr1:145382373..145383063-chr9:139622320..139622824,2	Hela-S3	cervix:
9	chr17:42976345..42976863-chr9:139622579..139623081,2	Hela-S3	cervix:
10	chr9:139619516..139623685-chr9:139693810..139697808,6	K562	blood:
11	chr9:139620315..139626197-chr9:139646581..139660029,24	MCF-7	breast:
12	chr9:139620423..139623520-chr9:139779258..139782010,3	K562	blood:
13	chr9:139616966..139626046-chr9:139651480..139662091,27	MCF-7	breast:
14	chr9:139376700..139379516-chr9:139619052..139623345,7	K562	blood:
15	chr9:139621206..139624482-chr9:139640401..139643595,4	MCF-7	breast:
16	chr9:139619516..139624583-chr9:139694122..139697808,6	K562	blood:
17	chr9:139621166..139623955-chr9:139702630..139705456,7	K562	blood:
18	chr9:139621075..139623829-chr9:139838145..139840956,4	K562	blood:
19	chr9:139621283..139623624-chr9:139709287..139711634,2	K562	blood:
20	chr9:139621177..139623935-chr9:139715647..139719817,3	MCF-7	breast:
21	chr9:139620963..139623863-chr9:139946422..139948967,2	K562	blood:
22	chr19:49956664..49957199-chr9:139622142..139623052,2	NB4	blood:
23	chr6:27114558..27115443-chr9:139621931..139622908,2	Hela-S3	cervix:
24	chr7:84568918..84570842-chr9:139619990..139622918,5	MCF-7	breast:
25	chr9:139586216..139592582-chr9:139618001..139626030,23	MCF-7	breast:
26	chr5:81267320..81268183-chr9:139622291..139623081,2	Hela-S3	cervix:
27	chr9:139621166..139623785-chr9:139780041..139782196,3	K562	blood:
28	chr14:39901703..39902317-chr9:139622158..139622665,2	Hela-S3	cervix:
29	chr7:84569339..84569844-chr9:139622178..139622773,3	MCF-7	breast:
30	chr9:139440519..139442759-chr9:139620071..139622669,2	MCF-7	breast:
31	chr9:123963665..123964453-chr9:139622156..139623139,2	NB4	blood:
32	chr9:139376314..139380925-chr9:139621169..139625507,6	MCF-7	breast:
33	chr9:139621146..139622893-chr9:139980116..139982904,2	K562	blood:
34	chr9:139621264..139624234-chr9:139940317..139942118,2	K562	blood:
35	chr6:43737532..43738100-chr9:139622184..139623080,2	HCT-116	colon:
36	chr9:139376144..139379676-chr9:139621146..139625438,7	K562	blood:
37	chr9:139619929..139623671-chr9:139747589..139752463,5	K562	blood:
38	chr14:75745124..75745770-chr9:139622194..139623009,3	Hela-S3	cervix:
39	chr9:139618685..139627120-chr9:139649384..139659403,28	K562	blood:
40	chr9:139550367..139553990-chr9:139620470..139623821,3	MCF-7	breast:
41	chr9:139496776..139498565-chr9:139620965..139623947,2	K562	blood:
42	chr9:139621035..139624561-chr9:139681529..139687287,9	K562	blood:
43	chr9:139621304..139624184-chr9:139872879..139875710,3	K562	blood:
44	chr9:139620788..139624093-chr9:139694172..139695988,3	MCF-7	breast:
45	chr7:100026327..100026894-chr9:139622595..139623168,2	Hela-S3	cervix:
46	chr9:139620118..139623932-chr9:139922375..139925511,3	MCF-7	breast:
47	chr9:139620633..139624484-chr9:139701088..139704302,3	MCF-7	breast:
48	chr9:139621304..139623071-chr9:139872879..139875710,2	K562	blood:
49	chr17:46126011..46126583-chr9:139622137..139622713,2	HCT-116	colon:
50	chr9:139620467..139623691-chr9:139756256..139761738,5	K562	blood:

Variant related genes	Relation type
SNHG7	TF binding region
ENSG00000107331	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000236394	Chromatin interaction
ENSG00000184709	Chromatin interaction
ENSG00000177984	Chromatin interaction
ENSG00000176248	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000057663	Chromatin interaction
ENSG00000164620	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000152348	Chromatin interaction
ENSG00000265806	Chromatin interaction
ENSG00000196366	Chromatin interaction
ENSG00000148400	Chromatin interaction
ENSG00000272679	Chromatin interaction
ENSG00000176101	Chromatin interaction
ENSG00000221693	Chromatin interaction
ENSG00000105193	Chromatin interaction
ENSG00000232019	Chromatin interaction
ENSG00000265181	Chromatin interaction
ENSG00000112983	Chromatin interaction
ENSG00000079616	Chromatin interaction
ENSG00000272896	Chromatin interaction
ENSG00000149930	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000107223	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000213221	Chromatin interaction
ENSG00000263697	Chromatin interaction
ENSG00000165355	Chromatin interaction
ENSG00000266507	Chromatin interaction
ENSG00000196235	Chromatin interaction
ENSG00000199161	Chromatin interaction
ENSG00000273066	Chromatin interaction
ENSG00000171720	Chromatin interaction
ENSG00000169583	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000107317	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000136279	Chromatin interaction
ENSG00000213212	Chromatin interaction
ENSG00000244187	Chromatin interaction
ENSG00000104872	Chromatin interaction
ENSG00000228544	Chromatin interaction
ENSG00000169692	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000127191	Chromatin interaction
ENSG00000165516	Chromatin interaction
ENSG00000112984	Chromatin interaction
ENSG00000167131	Chromatin interaction
ENSG00000237886	Chromatin interaction
ENSG00000187922	Chromatin interaction
ENSG00000204003	Chromatin interaction
ENSG00000188229	Chromatin interaction
ENSG00000139437	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000261793	Chromatin interaction
ENSG00000107281	Chromatin interaction
ENSG00000204001	Chromatin interaction
ENSG00000054148	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000054179	Chromatin interaction
ENSG00000159069	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000177943	Chromatin interaction
ENSG00000082641	Chromatin interaction
ENSG00000119396	Chromatin interaction
ENSG00000252440	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000172889	Chromatin interaction
ENSG00000185863	Chromatin interaction
ENSG00000176919	Chromatin interaction
ENSG00000108883	Chromatin interaction
ENSG00000267206	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10114790	0.90[ASN][1000 genomes]
rs10118376	0.87[ASN][1000 genomes]
rs10118736	0.83[ASN][1000 genomes]
rs10870117	0.82[ASN][1000 genomes]
rs11145843	0.85[ASN][1000 genomes]
rs11145853	0.86[ASN][1000 genomes]
rs11145854	0.82[ASN][1000 genomes]
rs11145857	0.82[ASN][1000 genomes]
rs11145862	0.81[ASN][1000 genomes]
rs12342911	0.86[ASN][1000 genomes]
rs12345308	0.83[ASN][1000 genomes]
rs12350740	0.83[ASN][1000 genomes]
rs12684980	0.83[ASN][1000 genomes]
rs2275160	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2784071	0.84[ASN][1000 genomes]
rs2811727	0.82[ASN][1000 genomes]
rs2811728	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28678356	0.83[ASN][1000 genomes]
rs35852083	0.85[ASN][1000 genomes]
rs4585841	0.86[ASN][1000 genomes]
rs4880133	0.87[ASN][1000 genomes]
rs4880135	0.87[ASN][1000 genomes]
rs4880136	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58529385	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62582222	0.83[ASN][1000 genomes]
rs6560646	0.87[ASN][1000 genomes]
rs67957838	0.87[ASN][1000 genomes]
rs7848644	0.80[ASN][1000 genomes]
rs7848807	0.83[ASN][1000 genomes]
rs7855405	0.94[ASN][1000 genomes]
rs7859350	0.86[ASN][1000 genomes]
rs7859621	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862031	0.83[ASN][1000 genomes]
rs9411219	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9411224	0.82[ASN][1000 genomes]
rs9411225	0.83[ASN][1000 genomes]
rs9411269	0.87[ASN][1000 genomes]
rs945379	0.84[ASN][1000 genomes]
rs9886752	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849811	chr9:138939662-139755001	Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
2	esv1822553	chr9:138967205-139755539	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
3	nsv894326	chr9:139057463-139647074	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	260 gene(s)	inside rSNPs	diseases
4	nsv894337	chr9:139069713-139669111	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases
5	esv1851120	chr9:139101947-139711758	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
6	nsv430118	chr9:139101947-139795504	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	299 gene(s)	inside rSNPs	diseases
7	nsv894351	chr9:139124856-139679387	Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
8	nsv540342	chr9:139218422-139973312	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	317 gene(s)	inside rSNPs	diseases
9	esv2758204	chr9:139252829-139826485	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
10	esv2759720	chr9:139252829-139826485	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	270 gene(s)	inside rSNPs	diseases
11	nsv469918	chr9:139254317-140068342	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	341 gene(s)	inside rSNPs	diseases
12	esv1836722	chr9:139301583-139669111	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
13	esv1799492	chr9:139341612-139711758	Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	216 gene(s)	inside rSNPs	diseases
14	esv1807611	chr9:139344200-139633839	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
15	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
16	esv1803718	chr9:139368953-139643023	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
17	esv1851291	chr9:139371234-139669111	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	200 gene(s)	inside rSNPs	diseases
18	nsv894385	chr9:139376426-139647074	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
19	nsv894386	chr9:139376426-139693992	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	208 gene(s)	inside rSNPs	diseases
20	nsv1039149	chr9:139376829-139991102	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	303 gene(s)	inside rSNPs	diseases
21	esv1820573	chr9:139377938-139643023	Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
22	esv1839109	chr9:139377938-139660589	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
23	esv1829857	chr9:139385438-139760041	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
24	esv1819204	chr9:139388365-139758238	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	212 gene(s)	inside rSNPs	diseases
25	esv1803407	chr9:139393591-139643023	Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
26	esv1803979	chr9:139395473-139979276	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
27	esv1831778	chr9:139395473-139979276	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	267 gene(s)	inside rSNPs	diseases
28	esv1821575	chr9:139395473-140068342	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
29	nsv8579	chr9:139399884-139654708	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
30	nsv894392	chr9:139403102-139669111	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
31	nsv894402	chr9:139457506-139634495	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
32	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
33	nsv894409	chr9:139483954-139860264	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	209 gene(s)	inside rSNPs	diseases
34	nsv894420	chr9:139487092-139634495	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
35	esv1846227	chr9:139487092-139643023	Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
36	esv1794085	chr9:139487092-139649379	Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
37	esv1837438	chr9:139487092-139660589	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
38	nsv894421	chr9:139487092-139669111	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
39	nsv894422	chr9:139487092-139776400	Transcr. at gene 5' and 3' Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
40	nsv894428	chr9:139496028-139647074	ZNF genes & repeats Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
41	nsv894431	chr9:139522101-139642961	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	150 gene(s)	inside rSNPs	diseases
42	nsv894432	chr9:139522101-139869914	Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	205 gene(s)	inside rSNPs	diseases
43	nsv894439	chr9:139544437-139634495	Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
44	nsv894440	chr9:139544437-139841512	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
45	nsv894441	chr9:139544437-139860264	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
46	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
47	nsv540348	chr9:139550414-139687876	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
48	nsv894444	chr9:139553723-139627726	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
49	nsv894445	chr9:139556771-139669111	Bivalent Enhancer Genic enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
50	nsv1043160	chr9:139560991-139665208	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9411221	LCN8	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:139620000-139623000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:139620400-139623400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:139620600-139623800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:139621200-139623000	Active TSS	GM12878-XiMat	blood
5	chr9:139621200-139623400	Active TSS	Lung	lung
6	chr9:139621400-139622800	Active TSS	Pancreas	Pancrea
7	chr9:139621400-139623000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:139621400-139623000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:139621400-139623000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:139621400-139623200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:139621400-139623200	Active TSS	Ovary	ovary
12	chr9:139621400-139623200	Active TSS	Right Ventricle	heart
13	chr9:139621400-139623200	Active TSS	HSMMtube	muscle
14	chr9:139621400-139623400	Active TSS	Gastric	stomach
15	chr9:139621400-139623600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:139621400-139623600	Active TSS	Psoas Muscle	Psoas
17	chr9:139621400-139623800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr9:139621600-139622800	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr9:139621600-139622800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr9:139621600-139622800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:139621600-139622800	Active TSS	HMEC	breast
22	chr9:139621600-139623000	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr9:139621600-139623000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr9:139621600-139623000	Active TSS	Muscle Satellite Cultured Cells	--
25	chr9:139621600-139623000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:139621600-139623000	Active TSS	Thymus	Thymus
27	chr9:139621600-139623000	Active TSS	Hela-S3	cervix
28	chr9:139621600-139623200	Active TSS	H1 Cell Line	embryonic stem cell
29	chr9:139621600-139623200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:139621600-139623200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:139621600-139623200	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr9:139621600-139623400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:139621600-139623400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr9:139621600-139623400	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr9:139621600-139623400	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr9:139621600-139623400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:139621600-139623400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:139621600-139623400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:139621600-139623400	Active TSS	Brain Angular Gyrus	brain
40	chr9:139621600-139623400	Active TSS	Brain Hippocampus Middle	brain
41	chr9:139621600-139623400	Active TSS	Esophagus	oesophagus
42	chr9:139621600-139623400	Active TSS	Fetal Intestine Large	intestine
43	chr9:139621600-139623400	Active TSS	Fetal Intestine Small	intestine
44	chr9:139621600-139623400	Active TSS	Left Ventricle	heart
45	chr9:139621600-139623400	Active TSS	NHEK	skin
46	chr9:139621600-139623600	Active TSS	H9 Cell Line	embryonic stem cell
47	chr9:139621600-139623600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr9:139621600-139623600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:139621600-139623600	Active TSS	Colon Smooth Muscle	Colon
50	chr9:139621600-139623600	Active TSS	Fetal Kidney	kidney

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