Variant report
| Variant | rs228555 |
|---|---|
| Chromosome Location | chr1:79652793-79652794 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10735754 | 1.00[EUR][1000 genomes] |
| rs10874008 | 1.00[EUR][1000 genomes] |
| rs10874019 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10874021 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11162602 | 1.00[EUR][1000 genomes] |
| rs11162639 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11162641 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12057337 | 1.00[EUR][1000 genomes] |
| rs1487543 | 1.00[EUR][1000 genomes] |
| rs1487558 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1487559 | 1.00[EUR][1000 genomes] |
| rs1953083 | 1.00[EUR][1000 genomes] |
| rs228456 | 1.00[AMR][1000 genomes] |
| rs228459 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs228464 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs228548 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs402398 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4415519 | 1.00[EUR][1000 genomes] |
| rs4650385 | 1.00[EUR][1000 genomes] |
| rs4650386 | 1.00[EUR][1000 genomes] |
| rs4650637 | 1.00[EUR][1000 genomes] |
| rs61769016 | 1.00[EUR][1000 genomes] |
| rs6424629 | 1.00[EUR][1000 genomes] |
| rs6424635 | 1.00[EUR][1000 genomes] |
| rs6424636 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6662620 | 1.00[EUR][1000 genomes] |
| rs6684178 | 1.00[EUR][1000 genomes] |
| rs6700121 | 1.00[EUR][1000 genomes] |
| rs7527791 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7546780 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv830326 | chr1:79573379-79735667 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv871182 | chr1:79614989-79822735 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv999471 | chr1:79650363-79774433 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:79649600-79654000 | Active TSS | Adipose Nuclei | Adipose |
| 2 | chr1:79652400-79655600 | Enhancers | Hela-S3 | cervix |
| 3 | chr1:79652600-79653400 | Enhancers | Muscle Satellite Cultured Cells | -- |
