Variant report
Variant | rs6684178 |
---|---|
Chromosome Location | chr1:79523350-79523351 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
PSAT1P3 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10735754 | 1.00[EUR][1000 genomes] |
rs10747360 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10874008 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10874009 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10874019 | 1.00[EUR][1000 genomes] |
rs10874021 | 1.00[EUR][1000 genomes] |
rs11162602 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11162639 | 1.00[EUR][1000 genomes] |
rs11162641 | 1.00[EUR][1000 genomes] |
rs12022544 | 0.98[AFR][1000 genomes] |
rs12057337 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1487543 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1487558 | 1.00[EUR][1000 genomes] |
rs1487559 | 1.00[EUR][1000 genomes] |
rs1953083 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2087195 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs228459 | 1.00[EUR][1000 genomes] |
rs228464 | 1.00[EUR][1000 genomes] |
rs228548 | 1.00[EUR][1000 genomes] |
rs228555 | 1.00[EUR][1000 genomes] |
rs402398 | 1.00[EUR][1000 genomes] |
rs4414001 | 1.00[AMR][1000 genomes] |
rs4415519 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4650385 | 1.00[EUR][1000 genomes] |
rs4650386 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4650637 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61769016 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6424629 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6424635 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6424636 | 1.00[EUR][1000 genomes] |
rs6662620 | 1.00[EUR][1000 genomes] |
rs6700121 | 1.00[EUR][1000 genomes] |
rs7527791 | 1.00[EUR][1000 genomes] |
rs7546780 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv546619 | chr1:79233493-79614989 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | esv2830430 | chr1:79310760-79555593 | Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1010441 | chr1:79320299-79555315 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv1001894 | chr1:79351364-79542576 | Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv535014 | chr1:79351364-79542576 | Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv546630 | chr1:79506410-79557804 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | esv34074 | chr1:79513444-79585652 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv546631 | chr1:79518810-79614989 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:79519200-79525400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |