Variant report

Variant	rs402398
Chromosome Location	chr1:79621670-79621671
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10735754	1.00[EUR][1000 genomes]
rs10874008	1.00[EUR][1000 genomes]
rs10874019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11162602	1.00[EUR][1000 genomes]
rs11162639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11162641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057337	1.00[EUR][1000 genomes]
rs1487543	1.00[EUR][1000 genomes]
rs1487558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1487559	1.00[EUR][1000 genomes]
rs1953083	1.00[EUR][1000 genomes]
rs228456	1.00[AMR][1000 genomes]
rs228459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs228464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs228548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs228555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4415519	1.00[EUR][1000 genomes]
rs4650385	1.00[EUR][1000 genomes]
rs4650386	1.00[EUR][1000 genomes]
rs4650637	1.00[EUR][1000 genomes]
rs61769016	1.00[EUR][1000 genomes]
rs6424629	1.00[EUR][1000 genomes]
rs6424635	1.00[EUR][1000 genomes]
rs6424636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662620	1.00[EUR][1000 genomes]
rs6684178	1.00[EUR][1000 genomes]
rs6700121	1.00[EUR][1000 genomes]
rs7527791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7546780	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1005743	chr1:79540957-79621702	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79621200-79621800	Enhancers	Fetal Heart	heart
2	chr1:79621400-79621800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:79621600-79622000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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