Variant report

Variant	rs2285802
Chromosome Location	chr6:30209099-30209100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30208093..30209840-chr6:30213233..30214788,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1362089	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1573295	0.83[EUR][1000 genomes]
rs2021365	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2106070	0.83[EUR][1000 genomes]
rs2106071	0.81[EUR][1000 genomes]
rs2285801	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2394778	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2428505	0.85[EUR][1000 genomes]
rs2516721	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2516723	0.85[EUR][1000 genomes]
rs2844767	0.85[EUR][1000 genomes]
rs2844768	0.85[EUR][1000 genomes]
rs3094130	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094131	0.83[EUR][1000 genomes]
rs3094132	0.83[EUR][1000 genomes]
rs3094139	0.83[EUR][1000 genomes]
rs3094140	0.83[EUR][1000 genomes]
rs3094614	0.83[EUR][1000 genomes]
rs3094615	0.83[EUR][1000 genomes]
rs3094635	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094636	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094639	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3094640	0.84[AFR][1000 genomes]
rs3129694	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3130383	0.84[EUR][1000 genomes]
rs3130384	0.84[EUR][1000 genomes]
rs3130386	0.84[EUR][1000 genomes]
rs3130388	0.83[EUR][1000 genomes]
rs3130389	0.82[EUR][1000 genomes]
rs3130391	0.83[EUR][1000 genomes]
rs3130393	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3132660	0.81[EUR][1000 genomes]
rs3132664	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3132665	0.83[EUR][1000 genomes]
rs3132668	0.83[EUR][1000 genomes]
rs3132669	0.82[EUR][1000 genomes]
rs3132671	0.83[EUR][1000 genomes]
rs3132672	0.83[EUR][1000 genomes]
rs3132673	0.83[EUR][1000 genomes]
rs3132674	0.83[EUR][1000 genomes]
rs7383511	0.82[EUR][1000 genomes]
rs916568	0.83[EUR][1000 genomes]
rs916571	0.83[EUR][1000 genomes]
rs916572	0.82[EUR][1000 genomes]
rs9261592	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412822	chr6:30207123-30209221	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30205600-30213000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:30208400-30211600	Weak transcription	Brain Angular Gyrus	brain

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