Variant report

Variant	rs2844767
Chromosome Location	chr6:30222256-30222257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1362089	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573295	0.83[EUR][1000 genomes]
rs2021365	0.85[EUR][1000 genomes]
rs2021366	0.82[ASN][1000 genomes]
rs2106070	0.83[EUR][1000 genomes]
rs2253163	0.82[ASN][1000 genomes]
rs2253164	0.82[ASN][1000 genomes]
rs2285801	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2285802	0.85[EUR][1000 genomes]
rs2394778	0.86[EUR][1000 genomes]
rs2428505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516721	0.92[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2516723	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844768	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2844778	0.87[ASN][1000 genomes]
rs3094130	0.86[EUR][1000 genomes]
rs3094131	0.83[EUR][1000 genomes]
rs3094132	0.83[EUR][1000 genomes]
rs3094139	0.83[EUR][1000 genomes]
rs3094140	0.83[EUR][1000 genomes]
rs3094614	0.84[EUR][1000 genomes]
rs3094615	0.83[EUR][1000 genomes]
rs3094635	0.85[EUR][1000 genomes]
rs3094636	0.86[EUR][1000 genomes]
rs3094639	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3129694	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130381	0.81[EUR][1000 genomes]
rs3130383	0.83[EUR][1000 genomes]
rs3130384	0.83[EUR][1000 genomes]
rs3130386	0.83[EUR][1000 genomes]
rs3130388	0.83[EUR][1000 genomes]
rs3130389	0.82[EUR][1000 genomes]
rs3130391	0.83[EUR][1000 genomes]
rs3130393	0.82[EUR][1000 genomes]
rs3132660	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3132664	0.85[EUR][1000 genomes]
rs3132665	0.83[EUR][1000 genomes]
rs3132668	0.83[EUR][1000 genomes]
rs3132669	0.82[EUR][1000 genomes]
rs3132671	0.84[EUR][1000 genomes]
rs3132672	0.82[EUR][1000 genomes]
rs3132673	0.83[EUR][1000 genomes]
rs3132674	0.83[EUR][1000 genomes]
rs35848695	0.80[ASN][1000 genomes]
rs4959046	0.82[ASN][1000 genomes]
rs7383511	0.81[EUR][1000 genomes]
rs916568	0.83[EUR][1000 genomes]
rs916571	0.83[EUR][1000 genomes]
rs916572	0.82[EUR][1000 genomes]
rs9261592	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2844767	ZKSCAN3	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30218800-30226000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:30222200-30222600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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