Variant report

Variant	rs916572
Chromosome Location	chr6:30198689-30198690
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1362089	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1573295	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2021365	0.82[EUR][1000 genomes]
rs2021366	0.88[ASN][1000 genomes]
rs2074472	0.94[ASN][1000 genomes]
rs2074473	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2097772	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2106070	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2106071	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107196	0.88[ASN][1000 genomes]
rs2158283	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2253163	0.88[ASN][1000 genomes]
rs2253164	0.88[ASN][1000 genomes]
rs2284164	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2285801	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285802	0.82[EUR][1000 genomes]
rs2394737	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2394778	0.83[EUR][1000 genomes]
rs2428505	0.82[EUR][1000 genomes]
rs2508029	0.90[ASN][1000 genomes]
rs2516723	0.82[EUR][1000 genomes]
rs2517614	0.81[AFR][1000 genomes]
rs2523722	0.81[AFR][1000 genomes]
rs28398051	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28441239	0.84[ASN][1000 genomes]
rs2844767	0.82[EUR][1000 genomes]
rs2844768	0.82[EUR][1000 genomes]
rs2844778	0.84[ASN][1000 genomes]
rs2844782	0.90[ASN][1000 genomes]
rs2844786	0.90[ASN][1000 genomes]
rs3094130	0.83[EUR][1000 genomes]
rs3094131	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094132	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094139	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094140	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094614	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3094615	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3094635	0.82[EUR][1000 genomes]
rs3094636	0.83[EUR][1000 genomes]
rs3094637	0.83[ASN][1000 genomes]
rs3094638	0.82[ASN][1000 genomes]
rs3094639	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3129694	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130381	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130382	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3130383	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130384	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130386	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3130387	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3130388	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130391	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130393	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130394	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3132664	0.84[EUR][1000 genomes]
rs3132665	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3132668	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132669	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132671	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3132672	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3132674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35848695	0.86[ASN][1000 genomes]
rs4959046	0.88[ASN][1000 genomes]
rs6457164	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457165	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457167	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs718254	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7382110	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7383511	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs757257	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs765977	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763162	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7764012	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7774730	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs885914	0.95[ASN][1000 genomes]
rs885915	0.97[ASN][1000 genomes]
rs916568	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs916571	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261539	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261543	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261546	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261548	0.81[ASN][1000 genomes]
rs9261592	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv884059	chr6:30190484-30199016	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv884060	chr6:30190640-30203602	Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30197800-30200000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:30198000-30199200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:30198000-30199600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:30198200-30199800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:30198400-30199800	Enhancers	HSMMtube	muscle

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