Variant report

Variant	rs35848695
Chromosome Location	chr6:30207726-30207727
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1362089	0.95[ASN][1000 genomes]
rs1573295	0.83[ASN][1000 genomes]
rs2021366	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074472	0.82[ASN][1000 genomes]
rs2106070	0.81[ASN][1000 genomes]
rs2253163	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253164	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2285801	0.95[ASN][1000 genomes]
rs2428505	0.80[ASN][1000 genomes]
rs2508029	0.81[ASN][1000 genomes]
rs2516723	0.80[ASN][1000 genomes]
rs2844767	0.80[ASN][1000 genomes]
rs2844768	0.85[ASN][1000 genomes]
rs2844778	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2844782	0.81[ASN][1000 genomes]
rs2844786	0.81[ASN][1000 genomes]
rs3094131	0.83[ASN][1000 genomes]
rs3094132	0.83[ASN][1000 genomes]
rs3094139	0.86[ASN][1000 genomes]
rs3094140	0.83[ASN][1000 genomes]
rs3094614	0.81[ASN][1000 genomes]
rs3094637	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3094638	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094639	0.91[ASN][1000 genomes]
rs3129694	0.96[ASN][1000 genomes]
rs3130381	0.82[ASN][1000 genomes]
rs3130382	0.82[ASN][1000 genomes]
rs3130383	0.80[ASN][1000 genomes]
rs3130384	0.80[ASN][1000 genomes]
rs3130386	0.80[ASN][1000 genomes]
rs3130388	0.83[ASN][1000 genomes]
rs3130389	0.86[ASN][1000 genomes]
rs3130391	0.83[ASN][1000 genomes]
rs3130393	0.82[ASN][1000 genomes]
rs3130394	0.84[ASN][1000 genomes]
rs3132665	0.81[ASN][1000 genomes]
rs3132668	0.82[ASN][1000 genomes]
rs3132671	0.81[ASN][1000 genomes]
rs3132672	0.80[ASN][1000 genomes]
rs3132673	0.87[ASN][1000 genomes]
rs3132674	0.87[ASN][1000 genomes]
rs4959046	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7383511	0.84[ASN][1000 genomes]
rs757257	0.81[ASN][1000 genomes]
rs7763162	0.81[ASN][1000 genomes]
rs7764012	0.80[ASN][1000 genomes]
rs885914	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs885915	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs916568	0.83[ASN][1000 genomes]
rs916571	0.86[ASN][1000 genomes]
rs916572	0.86[ASN][1000 genomes]
rs9261546	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412822	chr6:30207123-30209221	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2428476	chr6:30207271-30208835	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3473887	chr6:30207648-30208353	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3430366	chr6:30207668-30208330	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30205600-30213000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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