Variant report

Variant	rs3094132
Chromosome Location	chr6:30187434-30187435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30186843..30187585-chr6:30364587..30365117,2	MCF-7	breast:
2	chr6:30185779..30188163-chr6:30312459..30314446,2	MCF-7	breast:
3	chr6:30186670..30187594-chr6:30364355..30365372,7	K562	blood:
4	chr6:30187236..30189646-chr6:30189831..30192507,2	K562	blood:
5	chr16:931776..932561-chr6:30187031..30187732,2	MCF-7	breast:
6	chr6:30032989..30035787-chr6:30185731..30187917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204619	Chromatin interaction
ENSG00000241370	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1362089	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021365	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2021366	0.84[ASN][1000 genomes]
rs2074472	0.90[ASN][1000 genomes]
rs2074473	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2097772	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2106070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2106071	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2107196	0.84[ASN][1000 genomes]
rs2158283	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253163	0.84[ASN][1000 genomes]
rs2253164	0.84[ASN][1000 genomes]
rs2284164	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285801	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2285802	0.83[EUR][1000 genomes]
rs2394737	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2394778	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2428503	0.80[AFR][1000 genomes]
rs2428505	0.83[EUR][1000 genomes]
rs2508029	0.86[ASN][1000 genomes]
rs2516723	0.83[EUR][1000 genomes]
rs2517611	0.80[AFR][1000 genomes]
rs2517614	0.83[AFR][1000 genomes]
rs2523713	0.80[AFR][1000 genomes]
rs2523722	0.83[AFR][1000 genomes]
rs28398051	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28441239	0.88[ASN][1000 genomes]
rs2844767	0.83[EUR][1000 genomes]
rs2844768	0.83[EUR][1000 genomes]
rs2844778	0.88[ASN][1000 genomes]
rs2844782	0.86[ASN][1000 genomes]
rs2844786	0.86[ASN][1000 genomes]
rs3094130	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3094131	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094139	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3094615	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3094635	0.83[EUR][1000 genomes]
rs3094636	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3094639	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3129694	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130381	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3130382	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130383	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3130384	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3130386	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3130387	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3130388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130389	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130393	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3130394	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3132664	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3132665	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3132668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3132669	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3132671	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3132672	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3132673	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132674	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35848695	0.83[ASN][1000 genomes]
rs4959046	0.84[ASN][1000 genomes]
rs6457164	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457165	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457167	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs718254	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7382110	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7383511	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757257	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs765977	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7763162	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7764012	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7774730	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs885914	0.91[ASN][1000 genomes]
rs885915	0.93[ASN][1000 genomes]
rs916568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916571	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs916572	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261539	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261543	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261546	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261548	0.85[ASN][1000 genomes]
rs9261592	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs971570	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30182600-30189200	Weak transcription	Right Atrium	heart
2	chr6:30185400-30190400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:30186400-30187800	Enhancers	HepG2	liver
4	chr6:30187000-30187600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:30187200-30187600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:30187200-30187600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:30187200-30187600	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:30187200-30187600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:30187200-30187600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:30187200-30187600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:30187200-30187600	Enhancers	Adipose Nuclei	Adipose
12	chr6:30187200-30187600	Enhancers	Fetal Intestine Large	intestine
13	chr6:30187200-30187600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:30187400-30188400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:30187400-30191200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links