Variant report

Variant	rs9261546
Chromosome Location	chr6:30148461-30148462
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30146840..30149453-chr6:30151238..30153459,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1362089	0.81[ASN][1000 genomes]
rs1573295	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2021366	0.83[ASN][1000 genomes]
rs2074472	0.97[ASN][1000 genomes]
rs2074473	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2097772	0.84[ASN][1000 genomes]
rs2106070	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2106071	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2107196	0.95[ASN][1000 genomes]
rs2158283	0.85[ASN][1000 genomes]
rs2253163	0.83[ASN][1000 genomes]
rs2253164	0.83[ASN][1000 genomes]
rs2284164	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2285801	0.82[ASN][1000 genomes]
rs2394737	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2508029	0.96[ASN][1000 genomes]
rs28441239	0.89[ASN][1000 genomes]
rs2844782	0.96[ASN][1000 genomes]
rs2844786	0.96[ASN][1000 genomes]
rs3094131	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3094132	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3094139	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3094140	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3094614	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3094615	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3129694	0.83[ASN][1000 genomes]
rs3130381	0.88[ASN][1000 genomes]
rs3130382	0.89[ASN][1000 genomes]
rs3130383	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3130384	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3130386	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3130387	0.85[ASN][1000 genomes]
rs3130388	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3130389	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3130391	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3130393	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130394	0.87[ASN][1000 genomes]
rs3132665	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3132668	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3132669	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3132671	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3132672	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132673	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132674	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35848695	0.81[ASN][1000 genomes]
rs4959046	0.83[ASN][1000 genomes]
rs6457164	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457165	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6457167	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs718254	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7382110	0.87[ASN][1000 genomes]
rs7383511	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs757257	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765977	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7763162	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764012	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774730	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs885914	0.88[ASN][1000 genomes]
rs885915	0.90[ASN][1000 genomes]
rs916568	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs916571	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs916572	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261539	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261543	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261548	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884057	chr6:30140540-30149251	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30139000-30152000	Weak transcription	Liver	Liver
2	chr6:30142000-30149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
4	chr6:30147600-30150800	Weak transcription	HepG2	liver
5	chr6:30147800-30152000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:30148000-30151600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:30148000-30152000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:30148000-30152000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:30148000-30152200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:30148000-30152200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:30148000-30152600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
14	chr6:30148200-30152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:30148200-30152400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:30148200-30154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:30148400-30154000	Weak transcription	HUVEC	blood vessel

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