Variant report

Variant	rs3130382
Chromosome Location	chr6:30177917-30177918
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30176086..30179759-chr6:30179877..30183202,4	K562	blood:
2	chr6:30175583..30179292-chr6:30184478..30187344,3	K562	blood:
3	chr6:30177177..30179717-chr6:30228563..30230650,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234127	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1362089	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1573295	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2021366	0.82[ASN][1000 genomes]
rs2074472	0.91[ASN][1000 genomes]
rs2074473	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2097772	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2106070	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2106071	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2107196	0.85[ASN][1000 genomes]
rs2158283	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2253163	0.82[ASN][1000 genomes]
rs2253164	0.82[ASN][1000 genomes]
rs2284164	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285801	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2394737	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2428503	0.81[AFR][1000 genomes]
rs2508029	0.87[ASN][1000 genomes]
rs2517608	0.80[AFR][1000 genomes]
rs2517611	0.81[AFR][1000 genomes]
rs2517614	0.83[AFR][1000 genomes]
rs2523713	0.81[AFR][1000 genomes]
rs2523722	0.83[AFR][1000 genomes]
rs28398051	0.81[ASN][1000 genomes]
rs28441239	0.86[ASN][1000 genomes]
rs2844778	0.83[ASN][1000 genomes]
rs2844782	0.87[ASN][1000 genomes]
rs2844786	0.87[ASN][1000 genomes]
rs3094131	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3094132	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3094139	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3094140	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3094614	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3094615	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3094639	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3129694	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3130381	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3130383	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130384	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130386	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130387	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3130388	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130389	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3130391	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130393	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3130394	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132665	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132668	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3132669	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3132671	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3132672	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3132673	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132674	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35848695	0.82[ASN][1000 genomes]
rs4959046	0.82[ASN][1000 genomes]
rs6457164	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457165	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457167	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs718254	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7382110	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7383511	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs757257	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs765977	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7763162	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7764012	0.88[ASN][1000 genomes]
rs7774730	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885914	0.89[ASN][1000 genomes]
rs885915	0.91[ASN][1000 genomes]
rs916568	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs916571	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916572	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9261539	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9261543	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9261546	0.89[ASN][1000 genomes]
rs9261548	0.85[ASN][1000 genomes]
rs971570	0.81[AFR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30150600-30179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:30158400-30179600	Weak transcription	Fetal Brain Male	brain
3	chr6:30167000-30178000	Weak transcription	Fetal Brain Female	brain
4	chr6:30168800-30179800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:30169000-30179800	Weak transcription	Aorta	Aorta
6	chr6:30170200-30179200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:30170600-30179600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:30172400-30179200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:30172600-30178400	Enhancers	Esophagus	oesophagus
10	chr6:30172600-30179800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:30173000-30179200	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr6:30173200-30178400	Enhancers	Pancreas	Pancrea
13	chr6:30173400-30179600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:30173400-30179800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:30173400-30179800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:30173800-30179800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr6:30173800-30180000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:30174600-30180400	Enhancers	Small Intestine	intestine
19	chr6:30174800-30179200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:30175000-30178200	Weak transcription	Fetal Stomach	stomach
21	chr6:30175000-30179200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:30175000-30179200	Enhancers	Fetal Intestine Small	intestine
23	chr6:30175000-30179800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:30175400-30178200	Weak transcription	Brain Anterior Caudate	brain
25	chr6:30175400-30179000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:30175400-30180000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:30175600-30178000	Weak transcription	Ovary	ovary
28	chr6:30175600-30178800	Weak transcription	Fetal Thymus	thymus
29	chr6:30175800-30178000	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:30175800-30178000	Weak transcription	Right Atrium	heart
31	chr6:30175800-30178000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:30175800-30178200	Weak transcription	Primary B cells from cord blood	blood
33	chr6:30175800-30178200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:30175800-30179000	Weak transcription	HSMMtube	muscle
35	chr6:30175800-30179400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:30175800-30179800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:30175800-30179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:30175800-30180400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:30175800-30180400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:30175800-30180600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:30176000-30178000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:30176000-30178600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:30176000-30179200	Weak transcription	NH-A	brain
44	chr6:30176000-30179400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:30176200-30178000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:30176200-30178000	Weak transcription	Brain Angular Gyrus	brain
47	chr6:30176200-30178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:30176200-30178000	Weak transcription	Spleen	Spleen
49	chr6:30176200-30178200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:30176200-30178200	Enhancers	Liver	Liver

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