Variant report

Variant	rs3130394
Chromosome Location	chr6:30195059-30195060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30194307..30196564-chr6:30200875..30202443,2	K562	blood:

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1362089	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573295	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2021366	0.84[ASN][1000 genomes]
rs2074472	0.90[ASN][1000 genomes]
rs2074473	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2097772	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2106070	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2106071	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2107196	0.84[ASN][1000 genomes]
rs2158283	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2253163	0.84[ASN][1000 genomes]
rs2253164	0.84[ASN][1000 genomes]
rs2284164	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2285801	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2394737	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2508029	0.85[ASN][1000 genomes]
rs28398051	0.81[AMR][1000 genomes]
rs2844782	0.85[ASN][1000 genomes]
rs2844786	0.85[ASN][1000 genomes]
rs3094131	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094132	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094139	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3094140	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3094614	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3094615	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3094639	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3129694	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3130381	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3130382	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3130383	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3130384	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3130386	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3130387	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3130388	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3130389	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3130391	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3130393	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132665	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132668	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132669	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3132671	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132672	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3132673	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3132674	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35848695	0.84[ASN][1000 genomes]
rs4959046	0.84[ASN][1000 genomes]
rs6457164	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457165	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457167	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs718254	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7382110	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7383511	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757257	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs765977	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7763162	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7764012	0.86[ASN][1000 genomes]
rs7774730	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs885914	0.90[ASN][1000 genomes]
rs885915	0.93[ASN][1000 genomes]
rs916568	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs916571	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs916572	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261539	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9261543	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9261546	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv884059	chr6:30190484-30199016	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv884060	chr6:30190640-30203602	Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30195000-30196200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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